Streptomyces solisilvae: I1A49_23885
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Entry
I1A49_23885 CDS
T07406
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssoi
Streptomyces solisilvae
Pathway
ssoi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I1A49_23885 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssoi03400
]
I1A49_23885 (ligD)
Enzymes [BR:
ssoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I1A49_23885 (ligD)
DNA repair and recombination proteins [BR:
ssoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I1A49_23885 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DUF6207
Motif
Other DBs
NCBI-ProteinID:
QPI57550
LinkDB
All DBs
Position
complement(5919523..5920467)
Genome browser
AA seq
314 aa
AA seq
DB search
MSEKRTDARNVRSGGRTVRISRPEKELFPGDGITKWDLVEYYRSVSRRIIPQLRGRPLMM
ERHPDGIGGKPLMQKNAPGYFPDWVRRAVLPKESGEVVHVVCDDTATLLYLADQACVTPH
RWLSRADRPDHPDRLVFDLDPPSSGESGFEEVRWTARRCRGLLGELGLPGLLMTTGSRGL
HVIVPLDRRADFDTVRSFARDAADLLAARHPDRLTTEPRKANRRGRLYLDIQRNAYAQTA
VTPYAVRARPGAPVATPIDGRELDDPELRSDRWTLRTLRERLADDPWARTDTRGRSLRAP
RERLKRLAEGEGEG
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaagcggaccgatgcgcggaacgtcaggagcgggggccgcaccgtacggatc
agccggccggaaaaggagctcttccccggcgacgggatcacgaagtgggatctcgtcgag
tactaccgttcggtctcccggcgcatcattccgcagttgcgcggccgccctttgatgatg
gaacgccatccggacggaatcggcggcaagccgctcatgcagaagaacgcacccggctac
tttccggactgggtgcgccgcgccgtactccccaaagaaagcggcgaggtcgtccatgtg
gtctgcgacgacaccgcgaccctcctctacctcgccgaccaggcatgcgtcaccccgcac
cgctggctctcccgcgccgaccggcccgaccaccccgaccggctggtcttcgacctcgat
ccgccctcgtcgggggagtccggcttcgaggaggtgcgctggacggcccgccgctgccgc
gggctgctcggcgagctggggctgccggggctgctgatgaccaccggctcccgcggactg
cacgtcatcgtcccgctggaccgccgcgccgacttcgacaccgtgcggtccttcgcccgt
gacgccgccgatctgctggccgcccgccaccccgaccggctcaccaccgagccgcgcaag
gccaaccggcgtggccggctctacctggacatccagcgcaacgcctatgcgcagaccgcc
gtcaccccgtacgcggtgcgcgcccgccccggagcccccgtcgccacgcccatcgacggg
cgggagctggacgacccggagctgcggtcggaccgctggacgctgcggaccctccgcgag
cggctcgcggacgacccctgggcccgtacggacaccaggggccgttcgctgcgcgccccg
cgcgagcggctgaagcggctcgcggagggcgagggcgagggctaa
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