Shewanella spartinae: K0I31_07540
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Entry
K0I31_07540 CDS
T09209
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sspa
Shewanella spartinae
Pathway
sspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I31_07540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspa03019
]
K0I31_07540
Enzymes [BR:
sspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0I31_07540
Messenger RNA biogenesis [BR:
sspa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I31_07540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QYJ95789
LinkDB
All DBs
Position
1688971..1690242
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AA seq
423 aa
AA seq
DB search
MSLSTTDFSQLNLVKALQARLHHLGYQQATPIQAKAIPAILAGRDLLAGAKTGSGKTAAF
ALPLLQKLVGQRAGGGNYVGALVLVPTRELAQQVADSFISYGAELAPRAKVVAVFGGVSA
NSQMLALRGGADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRMLNLGFTEELGEILK
QLPDQKQTLLFSATFPEEVLSLTAKLLTAPVEIQLQEAQSADIEQRVYTVNRSNKTALLA
ELIKVRQWRQVLVFASAKRSCDHLAQKLEKRGISAQVFHGDKAQGTRSRFLDGFKNGEIT
VLIATDIAARGIDIDKLPVVINFELPRSPADYLHRIGRSGRAGETGEAISLISHDEYHHF
KVIEKKNKLRLPREQYPGFEADAEAPLDCPSRQDKPMAKPEGTGKKKRKKLPKINDAIWK
RPS
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
ctgtcgctgtcgacgaccgattttagtcagttaaacctggtcaaggcgctgcaggccaga
ctgcatcacctaggttatcagcaggcgacgccgattcaggccaaggcgatccccgccatc
ttggctggtcgcgatctgcttgccggtgccaagacaggttcgggtaagaccgccgccttc
gcactgcccttgttgcagaagctggtgggacagagagccggtggcggcaattatgttggc
gcactggtgttggtgccgacccgtgagcttgcccagcaggtggccgatagcttcatcagc
tatggcgccgagctggcgccaagagccaaggtggtcgccgtattcggtggcgtctcggcg
aacagccagatgctggccctgcgtggcggcgccgatattctggtggcgaccccgggccgt
ctgctggacctgctcggcagcaatgccgttaagctctctcagctaaaggccttagtgctc
gacgaagccgatcgcatgttgaatctgggcttcaccgaggagctcggcgagatcctcaag
caactgcccgaccagaaacagaccctgctgttctccgcgacttttcccgaagaggtgctt
agcctcaccgccaagctgctgaccgcccctgtcgagatccagctgcaggaggcgcagagc
gcggatatcgagcagcgcgtctacacagttaaccgtagtaacaagacggcgctgcttgcc
gagcttatcaaggtgcgtcagtggcgacaggtgttggtatttgccagcgctaagcgcagc
tgcgatcatttagcgcagaagctggagaagcgcggcatcagcgcccaggtcttccatggt
gacaaggcccagggcacccgtagtcgtttcctcgatggctttaagaatggcgaaattacc
gtgctgatcgccaccgacatcgcggcccgcggcatcgacatcgacaagctacccgtggtg
atcaacttcgaactgccaagaagtcccgccgactatctgcaccgtatcggtcgtagtggc
cgcgccggtgagacaggtgaggctatctctctcatcagccacgacgagtatcatcatttc
aaggtgatcgagaagaagaacaagctgcgtctgccaagggagcagtatcctggcttcgag
gccgatgccgaggcgccgctggattgtccttcgcgtcaggacaagcctatggcgaaaccc
gaaggcacgggcaagaaaaaacgtaaaaagttacccaagatcaatgacgcgatctggaag
cgtccctcatag
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