Streptomyces spongiicola: DDQ41_23995
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Entry
DDQ41_23995 CDS
T06937
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sspo
Streptomyces spongiicola
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sspo03016
]
DDQ41_23995
Enzymes [BR:
sspo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
DDQ41_23995
Transfer RNA biogenesis [BR:
sspo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
DDQ41_23995
Prokaryotic type
DDQ41_23995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C
TruB_C_2
PseudoU_synth_2
DKCLD
Motif
Other DBs
NCBI-ProteinID:
AWK11464
UniProt:
A0A2S1Z518
LinkDB
All DBs
Position
5466208..5467137
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AA seq
309 aa
AA seq
DB search
MSQHSNAAPAAGGGGTPDGLVIVDKPAGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGV
LVLGVQRATKLLGHLALTEKEYLGTVRLGQTTVTDDAEGEVTSSADASGIPREAIDAGVA
ALTGDIMQVPSKVSAIKIDGRRSYARVRGGEEFDIPARPVTVSRFTVHDVREGLAEDGTP
VTDLVVSVVCSSGTYVRALARDLGAGLGVGGHLTALRRTRVGPYRLGAARTVDQLQEELT
VMPIGEAAAAAFPRWDVDERRARLLLNGVRLDMPEYGGRGPVAVFGPEGRFLALVEEHRG
KAKSLAVFG
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcacagcaacgccgccccggccgccggcgggggcggcaccccggacggcctg
gtcatcgtcgacaagccggccggcttcacctcgcacgacgtcgtcgccaagatgcggggc
atcgcgcggacccgccgcgtcggtcacgcgggcacgctggacccgatggcgaccggagtg
ctcgtcctgggcgtccagcgggccaccaagctcctcggccatctggcgctcaccgagaag
gagtacctcggcacggtccggctgggccagaccacggtcaccgacgacgcggagggcgag
gtcacctcgtccgccgacgcctccggcatcccccgggaagcgatcgacgccggggtcgcc
gcactgaccggcgacatcatgcaggtgccgtcgaaggtcagcgccatcaagatcgacggg
cggcggtcctacgcacgggtccgcggcggcgaggagttcgacatccccgcccgtccggtg
accgtctcgcggttcaccgtccacgacgtccgcgagggcctcgccgaggacggcaccccc
gtcaccgacctcgtggtctcggtggtctgctcctccggcacctacgtccgcgccctcgcc
cgcgacctcggcgccggactcggcgtcggcgggcatctgaccgcactgcgccgcacccgc
gtcgggccgtaccgcctcggggcggccaggaccgtcgaccagctccaggaggagctgacg
gtcatgccgatcggcgaggccgcggcggcggcgttcccccgctgggacgtcgacgaaagg
cgcgcccggctgctgctcaacggcgtacgcctggacatgccggagtacggcggacggggc
ccggtggccgtcttcgggcccgaggggcggttcctggcactggtcgaggagcaccggggc
aaggcgaagagcctcgccgtcttcggctga
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