Solanum stenotomum: 125842553
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Entry
125842553 CDS
T08385
Name
(RefSeq) DNA mismatch repair protein MSH4 isoform X1
KO
K08740
DNA mismatch repair protein MSH4
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sstn03036
]
125842553
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Meiosis-specific proteins
Others
125842553
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
AAA_27
Motif
Other DBs
NCBI-GeneID:
125842553
NCBI-ProteinID:
XP_049377816
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Position
10:complement(4772779..4786681)
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AA seq
792 aa
AA seq
DB search
MEEDAGERSSFIVGFIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLQFYEPM
VIIVSPNKLAADGMVGVSQLADRVCSSTKKVIMARGCFDDTRGAVLVKGLAAKEPSALGL
DSYYKQYYLCLAAAAATIKWIEAEKGVIITNHSLLVTFNGSFDHMNIDSTSVQNLEIIEP
MHSSLLGTNNKKRSLFHMLKTTRTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQ
LFFGLSQALRKFPKETDRVLCHFCFKPKRVTNEVLASDNGRRSQIMISSIILLKTALDAL
PLLSKVLKEAKSCLLGNVYKTICENEKYTSIRKRIGEVIDEDVLHTRVPFVARTQQCFAV
KAGADGLLDMARRSFCDTSEAIHSLANKYRQDFKLPNLKIPFNNRQGFYFSIPQKDIQGK
LPSKFIQVVKHGNNVHCSSLELASLNVRNKSAAKECWLRTALCLEALMDAIREDVSVLTV
LAEALCLLDMMVNSFAHTISTKPVDRYTRARFTCDGPLAIDSGRHPILESIHNDFIPNGI
FLSEASNMAIVMGPNMSGKSTYLQQVCLMIILAQIGCYIPARFATLRVVDRIFTRMGTMD
SLESNSSTFMTEMKETAFIMQNVSHRSLIVMDELGRATSSSDGFAIAWSCCEHLLALKAY
SIFATHMENLSALSTMYPNVKILHFDVDVRNNRMDFKFQLKDGSRHVPHYGLMLAGVAGL
PSSVVETAKRITSRITEKEMKRMEVNCRQYEDVQLIYRVAQRLMCLKYSDQDEDSLREAL
QNLKESYIGGRL
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagacgccggagaaagatcaagcttcatcgtcgggttcatagagaaccgagcc
aaggaggttggagtagctgcgtttgatttgagatcagcgtcactgcatctttctcagtat
atagagacaagcagctcctatcaaaatacaaagactttactacagttctatgaacctatg
gtaatcattgtttcccccaataaactggcggcggatggaatggttggagtctcacaactg
gctgacagagtttgttcctccacaaaaaaggttataatggcccgtggttgctttgatgat
accaggggagctgtactggttaaaggtttagctgctaaggaaccgtctgctcttgggctg
gattcatactacaagcaatactatttgtgcttggctgcagcagctgcaactatcaagtgg
atcgaagcagagaaaggtgttattataacaaatcactctttgctggttacttttaatgga
tcttttgaccacatgaacattgattccaccagtgttcagaacttggagataattgagcct
atgcactcttctcttctgggcacaaacaacaaaaagagaagtttattccacatgcttaaa
acaactcgaactattggagggactagacttctgagggcaaatcttttgcagcctctgaaa
gacatagagacaattaacactcgactcgattgcctggatgagttgatgagcaatgaacag
ctattctttggtttgtctcaggcccttcgtaagtttccgaaagaaacagatagggtcctt
tgtcacttctgcttcaagccaaagagagttactaatgaagtcttggcttcggataatgga
agaaggagccagataatgatatccagcattattcttctcaaaacagctcttgatgcttta
ccgttactctccaaggttcttaaagaagccaagagttgtctgcttggaaatgtgtacaaa
accatatgtgagaatgaaaaatatacttcaataaggaaaagaattggagaggtgattgac
gaagatgtccttcatacaagagttccttttgttgcacggacacagcagtgttttgctgtt
aaggctggagcagatgggcttcttgatatggctcggcggtcattctgtgacaccagcgaa
gctatacacagtctcgcaaataagtatcgtcaagatttcaaactgccgaacttgaagatc
ccattcaataataggcaagggttttactttagcattccacagaaggacatacagggaaaa
ctgcccagcaagttcatccaggtcgtgaaacatggaaacaatgtccattgctcgagtctt
gagcttgcttcattgaatgtgaggaacaagtctgcagctaaagaatgctggttgaggact
gcactttgtcttgaagcattaatggatgcaatacgagaggatgtctctgtgcttactgtt
cttgcagaagcgttgtgccttttagacatgatggtaaattcatttgctcacactatatca
acaaaaccagttgatagatatactagagctcgttttacatgtgatggcccattggcaatt
gattctggacggcaccccattctggaaagcatacacaatgatttcattccaaatggcatc
tttctttctgaagcatcaaatatggctattgtaatgggcccaaacatgagcggaaaaagt
acttatcttcagcaagtttgtttaatgatcatccttgctcaaattggttgctatattcct
gctcgatttgccactttgagggtggtcgatcgtattttcacaaggatgggaacaatggac
agtctcgaatcaaactctagcacgttcatgacagagatgaaggagacggcttttatcatg
caaaacgtgtcccatagaagtctgattgttatggatgaattggggagggcaacttcatcc
tctgatggattcgcaatcgcgtggagctgttgtgagcatctattggcacttaaagcgtac
tcaatatttgcgactcatatggaaaatctatcagcactatccaccatgtatccaaatgta
aaaattcttcattttgatgttgatgtgaggaataaccgcatggacttcaagtttcaactg
aaggatgggtcacgtcatgtgccacattacggcctcatgctagcaggggtagctggatta
ccaagttcagtagtggagactgccaaaagaatcacatctaggatcacagagaaggaaatg
aagagaatggaggtgaattgcagacagtacgaggacgtacaattgatttaccgtgtagct
caacggctgatgtgcttgaaatattctgatcaggatgaagattctctaagggaggctctg
cagaaccttaaggaaagctatattggtggaaggctttag
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