Solanum stenotomum: 125877060
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Entry
125877060 CDS
T08385
Name
(RefSeq) ATP-dependent helicase rhp16-like
KO
K15083
DNA repair protein RAD16
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125877060
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
125877060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
DEAD
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
Phage_lysozyme
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
125877060
NCBI-ProteinID:
XP_049414327
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Position
9:complement(7867023..7881547)
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AA seq
738 aa
AA seq
DB search
MNPPIPDQMDEDTDAYHRFYGMVRRIEMRKYERERMQKIRRSVLTWEILEQEMDEFLLEN
YSDDLNLDIQNVSFAETAEAPSDLILPLLRYQKEWLAWSLKQETIFKGGILADEMGMGKT
VEAIALVLAQRELKKATSGSSILPSSPGTSQELPTVKGTLVVCPVIGATQWFHEIERCTT
KGSNKTVVYHGPNREKCMYKLEEYDFVITTYSVIQADYWPKKSKQNSKNSKWSDDGSIEN
SAWVGEDVSTRKSVLHSVKWERIILDEAHNIKSIHSNTTQAVLALESFYKWALTGTPLQN
RMGELYSFVRFLQVTPYACYFCEDCNCSGLDFSSYDVCSQCSHQPERHFLWWKNYIEKPL
KAYENEGRDALVWLKYKILKSLMLRRTKKERAVDLALPTKTVTVRKDSLDEREYDYYKTL
HNRSLAQFEIYAQIGHLMNNFGQILGMITPLWQAANHPYLVMYSRKELASDNKEAGDVEQ
SCVLCQDAVEDPVVTCCRHVFCRACMIYLAEDVRETPCPSCTKPLTFDFSGNKDKGDSSS
KPTVKEFRSSSILNKIQLDKFKTSTKIEALKEEISDMFERDGSAKGIVFSQFTSFLDLIK
YSLNLCGINCVQLVGSMSIAARDAALKRFTEDSNCKILLMSLKAGGVALNLTVASHVFIM
DPWWNPAVEQQAQDRVHRIGQYKPVKIVRFVMENTIEERILELQEKKKLLFEGTIGGSSE
ALGKLTTEDLISLFYYHF
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgccaattccagatcaaatggatgaagatacggatgcatatcatagattctat
ggcatggtgagaaggatagaaatgaggaaatatgaacgtgagaggatgcaaaagataaga
agatcagttttgacatgggagatactagaacaagaaatggatgaattccttctggagaat
tattcagatgatttaaacttggatattcagaacgtctcgtttgctgaaactgccgaggca
ccatcagatttgatcttgccactattgaggtaccaaaaggagtggttggcttggtcatta
aagcaagaaactatattcaaagggggtattcttgctgatgaaatgggaatggggaagacg
gttgaagccatagcacttgtgcttgctcaacgcgaattaaagaaagcaactagtggttct
agtatattgccgtcttcacccggtacctcccaggaactcccaacagtaaaaggaactctt
gttgtatgtcctgtgattggagcaacgcaatggtttcacgagattgaacgttgcaccact
aaaggaagcaacaaaactgttgtgtatcatggccccaacagggagaaatgtatgtacaaa
ctggaggaatatgattttgtcattactacgtattccgttatccaggctgattattggcca
aagaagtcaaaacagaatagcaagaactcaaaatggagtgacgatggttctattgaaaat
tcagcctgggttggtgaagatgtgtccacaaggaagtcagttctgcattcagtgaagtgg
gagcgcatcattttggatgaggctcataatatcaagtctatacacagcaacaccacacaa
gcggttcttgctttagaatctttttataagtgggcattgactggtacacccctgcaaaac
cgcatgggagaattgtactcatttgtccgtttcttacaagttacgccttatgcttgttac
ttttgtgaagattgtaattgcagtggacttgattttagctcctacgatgtgtgctcacag
tgctcccaccaacctgaacgccacttcctctggtggaagaactatattgaaaaaccttta
aaggcatacgaaaatgaaggtagagatgcgttggtttggttgaagtacaaaattctgaaa
agcctaatgctaagacgtaccaaaaaagaaagagctgtggatcttgcactccccacaaag
actgttacagtgagaaaagattctttggatgagagagaatacgactactacaagacattg
cacaatagaagccttgcacagttcgagatatatgcccagattggacatctgatgaataac
tttggtcaaattttgggtatgatcacacccctatggcaggcagctaatcatccttacctt
gtgatgtactctagaaaagaattggctagtgacaataaagaggctggagatgttgaacag
tcatgtgtcttatgtcaggatgcagtggaagatccagtagttacttgttgtaggcacgtg
ttttgcagggcgtgtatgatatatttagctgaagatgtgagggaaacgccatgcccttca
tgtaccaaacccctcacatttgacttctctggaaataaagataagggagattctagttct
aaacctactgtcaaagagtttaggtcctcaagtatattgaacaaaattcagctagataaa
ttcaagacaagcactaaaatagaagctttgaaggaagaaattagcgacatgtttgaaagg
gacggttctgcaaaaggaattgtgtttagccaattcacatcgtttttggatctgataaaa
tattctcttaatctgtgtggcatcaattgtgttcaattagttggatccatgtctattgcc
gcaagagatgctgcacttaaaagattcactgaggattcaaattgcaagatattgcttatg
agcttgaaagctggaggtgttgccctcaatcttacagttgcatcacatgttttcataatg
gatccttggtggaatcctgcagtggagcagcaagcccaagatagagtccatcgaataggg
caatataaaccagtcaagattgtgagatttgtgatggagaatacaattgaagagagaatc
ttagagttacaagagaagaagaaattactttttgaagggacaattggtggttcttcagag
gccttaggaaaactaacaactgaggacttgatatccctgttttattatcacttttga
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