Sphingomonas suaedae: FPZ54_17255
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Entry
FPZ54_17255 CDS
T07976
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssua
Sphingomonas suaedae
Pathway
ssua03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FPZ54_17255 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssua03400
]
FPZ54_17255 (ligD)
Enzymes [BR:
ssua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FPZ54_17255 (ligD)
DNA repair and recombination proteins [BR:
ssua03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FPZ54_17255 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
RBM39linker
Motif
Other DBs
NCBI-ProteinID:
QDX27580
UniProt:
A0A518RJH5
LinkDB
All DBs
Position
3642217..3644661
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AA seq
814 aa
AA seq
DB search
MAKTDPLARYNAMRDFAKTAEPRGEIAKGQGRRFIVQKHDATRLHWDFRLEIDGVLKSWA
VTRGPSLDPGEKRLAVRTEDHPMSYASFEGTIPKGEYGGGTVMLWDRGEWAPVPGKSAKD
LEKGHLHFVLEGERMKGEWLLIRLKPRGKEKRENWLLRKIDDAYAGATDVLVETGLTSVT
TGRTMQEIAEGVKPAAGRAKATAKSKPKRTAQAPAPAFRDPQLATLVDSVPAGNGWLHEM
KYDGYRALVAIGKGGPRVYTRSGLDWTDKFAGIAEAAASLPASSALIDGEVVAFRDGTPD
FSTLQDALSTGTGDLAFFAFDLLQQDGEDLADLPQIDRKERLRALLDGADPRLLFSEHVL
GAGEKLFEAMCREGHEGVISKRADAPYRGKRTRSWLKIKCTRRQEFVVIGWLPSSAKGRG
LRSLLLGVNADGALRYAGKVGTGFNASNSDDLMAKLARIERKTPPADVPKVAARGAHWVT
PKLVAEVAFAEFTAENVVRHASFIALREDKPAEDIVTERAASPPPAPQSDVKISSRDRVI
FPDAKITKGELADYYAVVAPIMLPWVADRPVSLVRCPQGRAKQCFFQKHDAGSFGDRVHH
VDIREKDGSVEPYLYIDDADGLLSCVQMGTIEFHGWGSRVADVEKPDRLVFDLDPDEGLD
FATVKKAAEDLKQHLADMGLTSFPMLTGGKGVHVVVPLTPQAEWPAVKSFADRFARALAQ
AEPERFTANLKKAERKNRIFIDYLRNQRGSTAVMPYSARARPGAPVAVPLSWSELRDTDS
AQLFSVRDATELLERAGGRALTGWGRADQVLPDL
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagactgacccgctcgccagatataatgcgatgcgcgatttcgcgaagaccgcc
gaaccgcgcggcgagatcgcgaaggggcaggggcggcggttcatcgtccagaagcatgac
gccacccggctgcactgggatttccggcttgagatcgatggcgtgctgaaaagctgggcg
gtgacgcgcggccccagcctcgatcctggcgaaaagcggctcgcggtgcggaccgaggat
catccgatgtcctatgccagtttcgaggggacgatcccaaagggcgaatatggcggcggc
acggtgatgctgtgggatcggggcgaatgggcgcccgtgccgggcaagagcgcgaaggat
ctcgagaaaggccatctccacttcgtccttgagggcgaacggatgaagggcgaatggctg
ctcatccgcctcaagccgcgcggcaaggagaagcgcgaaaactggctgctgcgcaagatc
gacgacgcttatgccggtgccaccgacgtgctggtcgagacggggctgacgagcgtcacc
accgggcggacgatgcaggagatcgccgagggcgtgaaacccgcggcggggcgtgcaaag
gcaacggcaaagtccaaacccaaacgaaccgcacaggctcccgctccggcttttcgcgac
ccccagctcgcaaccctggtcgacagcgttcccgccgggaatggctggctgcacgagatg
aaatatgacggctatcgcgccctcgtcgcgatcgggaagggggggccgcgcgtctatacc
cgcagcggcctcgactggaccgacaagttcgccggcatcgccgaggctgccgcgagcctt
cccgcatcgtccgcgctgatcgatggcgaagtggtcgccttcagggacggcacgcccgat
ttttcgacgcttcaggatgccttgtccacgggcaccggcgatctcgccttcttcgccttc
gacttgctccaacaggatggcgaggacttggccgatctcccccagatcgaccgcaaggaa
cggctccgtgctctgctcgacggcgccgatccgcgcctgctcttctccgaacatgtcctg
ggcgccggggagaagctgttcgaagcgatgtgccgcgaggggcacgaaggcgtcatctcg
aagcgcgccgatgccccgtatcgcggcaagcggaccaggagctggctcaagatcaaatgc
acgcggcggcaggaattcgtcgtcatcggctggctgccgagcagtgcgaaggggcgcgga
ttgcgttcattgctgctgggcgtcaacgcggatggcgcgctgcgctatgcgggcaaggtg
ggtacgggattcaacgcatcgaattccgatgacctgatggccaaactcgcccggatcgag
cgcaagaccccgcccgccgatgtgccgaaggtcgcggcacgcggggcgcattgggtcacg
ccgaagctggtcgcggaggtcgcctttgccgagttcaccgccgaaaacgtcgtccgccat
gcgagcttcatcgcgctgcgcgaggacaagcccgccgaggacatcgtgaccgaacgcgcc
gcatcgccaccgcctgcgccgcagagcgacgtcaagatcagcagccgcgaccgcgtgatc
tttcccgacgccaagatcaccaagggcgaactcgccgattactatgccgtagtcgcgccg
atcatgctcccctgggtcgccgaccgcccggtcagcctggtccgctgcccgcagggtcgc
gcgaagcaatgcttcttccagaagcatgacgcgggcagcttcggcgatcgcgtccatcat
gtcgacattcgggagaaggacgggtcggtcgaaccctatctctatatcgacgatgccgat
ggcctgctctcctgcgttcagatggggacgatcgagttccatggctggggcagccgcgtc
gcggatgtcgaaaagcccgaccggctggtgttcgacctcgaccccgatgaggggcttgat
ttcgcgacggtcaaaaaggcggcggaggacctcaaacagcatctcgccgatatgggcctg
accagctttccgatgctgaccggcggcaagggcgtccatgtcgtcgtgccgctgacaccg
caggcggaatggcccgcggtcaaatccttcgccgatcgcttcgcccgcgcgctcgcccag
gccgaacccgagcggttcaccgccaacctcaaaaaggccgagcgcaagaaccgcatcttc
atcgattaccttcgcaaccagcgcggcagcaccgccgtcatgccctattccgcccgcgcc
cgccccggcgccccggtcgcggtaccgctcagctggagcgaattgcgcgataccgacagc
gcgcaattgttcagcgttcgcgacgcgaccgaattgctggaacgtgcggggggccgtgcc
cttacgggctggggccgcgccgatcaggtgcttcccgacctgtga
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