Streptomyces sp. SirexAA-E: SACTE_4536
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Entry
SACTE_4536 CDS
T01601
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssx
Streptomyces sp. SirexAA-E
Pathway
ssx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SACTE_4536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssx03400
]
SACTE_4536
Enzymes [BR:
ssx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SACTE_4536
DNA repair and recombination proteins [BR:
ssx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SACTE_4536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
NAD_binding_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEN12366
UniProt:
G2NM89
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All DBs
Position
complement(5013021..5013914)
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AA seq
297 aa
AA seq
DB search
MTPITEVEGRRLALSNLDKVLYPATGTTKGEVLHYYAATAADAMLPHLRDRPLSFLRYPD
GPDGLRFFTKNPPPGTPDWVRTAPVPRTDDPDARQVLVQDLPSLMWAANLVVEFHTHQWR
RGTPAVADRMVFDLDPGAPASVVECCAVALWLRERLAADGLTAYGKTSGSKGLHLIVPLE
PAPAEDVTAYAKSLAVEAQKALPDLVVHRMTRALRPGKVFVDFSQNAAAKTTAAPYTLRA
KDSPTVSAPVTWEEVEACADPADLVFLAGDMAARLERYGDLLGPLTGPGPARPLPGV
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcacagaggtggaggggcggcgcctggcgctcagcaatctcgacaaggtg
ctgtatccggccaccggcaccaccaagggcgaggtgctgcactactacgcggccaccgcg
gccgacgcgatgctcccccacctgcgcgaccgcccgctgtccttcctccgctaccccgac
gggcccgacgggctgcgcttcttcaccaagaacccgccgcccggtacgcccgactgggtg
cgcaccgcgccggtgccccgcaccgatgacccggacgcccggcaggtgctcgtgcaggat
ctgccctcgctgatgtgggcggccaatctcgtggtggagttccacacccaccagtggcgc
cgcgggacgcccgcggtcgctgaccggatggtgttcgacctggaccccggagcaccggcg
agcgtcgtcgagtgctgcgccgtcgccctctggctgcgggagcggctggcggcggacggg
ctgaccgcgtacgggaagacctcgggctccaaggggctgcatctgatcgtgccgctggaa
cccgcccccgccgaggacgtcacggcctacgccaagtcgctggccgtcgaggcgcagaag
gcactgccggatctggtggtgcaccggatgacccgggcgctgcgcccggggaaggtcttc
gtcgatttcagccagaacgccgcggcgaagacgaccgccgcgccctacaccctgcgggcg
aaggacagccccacggtgtccgcacccgtcacctgggaggaggtcgaggcctgcgccgac
cccgccgacctggtcttcctcgccggggacatggccgcacggctggagcggtacggggat
ctgctcggcccgctcaccggccccggcccggcccgccccctgccgggcgtctga
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