Sphingobium sp. SYK-6: SLG_04290
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Entry
SLG_04290 CDS
T01622
Name
(GenBank) putative DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SLG_04290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssy03400
]
SLG_04290
Enzymes [BR:
ssy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SLG_04290
DNA repair and recombination proteins [BR:
ssy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SLG_04290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAK65104
NITE:
SLG_04290
UniProt:
G2IL41
LinkDB
All DBs
Position
complement(448909..451416)
Genome browser
AA seq
835 aa
AA seq
DB search
MARTDPLAAYNAKRDFGKTPEPAGEARRSEGGNLFVVQKHDATRLHWDFRLEMDGVLKSW
AVTKGPSLDPHDKRLAVRTEDHPLSYAQFEGGIPEGEYGGGTVMLWDQGVWAPIKGKSAK
DIEKGHLHFELHGERMKGEWLLVRMKPRPGEKRENWLLRKIDDAEAGTGDILVERELTSV
LTGRTMAEIAADREGVRSLAGKRGKAFNAVMADAAAHNRQTARGPARRQNKDARLPGFEA
VQLATLVDTVPTGNQWMHEIKFDGYRVLAAVMGAQVRLFTRSGLDWTEKFPPIAEALAAL
DLPAALIDGEVVALDGHGNPSFSALQAALKEGRDATLAYFAFDLLSLAGEDLKALPNIER
KERLEALLRQATAPVQVADHVIGAGEALFETLCSAGQEGIIAKRVDAPYRGKRTHNWLKI
KCTRRQEFVILGWTKSAARGRAFASLLLGQHEDGKLVYKGKVGTGFDRATMEDLAKRMGR
LARATAPAEVPRSEARGAQWLSPKLVGEIAFAEFTAEGRVRHGSFLGLRSDKEAKDVTPE
TPADTPEPRSDIRISSPDRVVFPESGQTKGELADYYRAIAPLMLPFAAGRPISLVRCPQG
RARHCFFQKHDSGSFGPHVSHVPIREKDGGTEDYLYLTDADGILACVQMGTIEFHGWGAK
AEDVEQPDRMIFDLDPDEGLGFDEVKRAARDIRRRLSDLGLVSFAMLSGGKGVHVVVPLT
PDHDWETHKDFSKRFAEALSLAEPDRFVATMSKAKRKGRIFIDWLRNQRGSTAVLPYSAR
ARAGAPVAIPISWEELDKMKDAHPFSISDAKTLMDRARDKALQGWGFVTQSLPDH
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggaccgatccgctcgccgcctataatgcgaagcgcgacttcgggaagacgccg
gagccggccggcgaggcccggcgcagcgaaggcggcaatctcttcgtggtgcagaagcac
gacgcgacgcgcctgcactgggacttccgcctcgagatggatggcgtgctcaagagctgg
gccgtgacgaaggggcccagcctcgacccccatgacaagcggctcgccgtgcgcaccgag
gaccatccgctttcctacgcgcagttcgagggcggcattcccgagggggaatatggcggc
ggcacggtgatgctctgggatcagggcgtctgggcgccgatcaagggcaagagcgcgaag
gacatcgagaagggccatctccatttcgagctccatggcgagcgcatgaagggcgaatgg
ctgctggtccgcatgaagccccgcccgggcgagaagcgcgagaactggctgctgcgcaag
atcgacgatgccgaagccggcaccggggacattctggtcgagcgcgaactgaccagcgtg
ctcaccggccgcacgatggcggaaatcgctgccgatcgcgaaggcgtgcgctcgctcgcc
ggcaagcggggcaaggcattcaatgccgtgatggccgacgcggcggcgcataaccgccaa
accgcccgggggcccgctcgccgccagaacaaggacgcccggctcccgggcttcgaggcc
gtgcaactcgcgaccctcgtcgacaccgtgcccaccggcaaccagtggatgcacgagatc
aagttcgacggctatcgggtgctggcggcggtcatgggcgcgcaggtgcgcctgttcacg
cgctccggcctcgactggaccgagaaattcccgccgatcgccgaggcgctggccgcgctc
gacctgcccgccgcgctgatcgacggcgaagtcgtggcgctggacgggcacggcaatccc
agcttctccgccttgcaggccgcgctcaaggaaggacgggatgcgacactcgcttatttc
gccttcgatctgctcagccttgccggcgaggacctgaaagccctgccaaacatcgagcgc
aaggagcggctcgaagcgctactgcgccaggcgacggcccccgtgcaggtcgccgatcat
gtcatcggcgcgggcgaagcgcttttcgagactttgtgcagcgcggggcaggaaggcatc
atcgccaagcgggtggatgcgccctatcgcggcaagcggacacacaactggctcaagatc
aaatgcacgcgccggcaggaattcgtgatattgggctggacgaagagcgcggcgcgcggc
cgcgccttcgcctcgctgctgctcgggcagcatgaagacggcaagctggtctacaagggc
aaggtcggcaccggattcgaccgggcgacgatggaggatctggcgaagcgaatgggcagg
ctcgcacgcgccaccgccccggcggaggtgccgcggagcgaggcccggggcgcgcaatgg
ctgagcccgaagctggtgggcgagatcgcctttgccgaattcacggcggaaggccgcgtt
cgccacgggagcttcctcggcctgcgcagcgacaaggaggcgaaagacgtgacgcccgaa
acgcctgccgacacgccggagccgcgcagcgacatccgcatatccagtccggaccgcgtc
gtctttcccgaaagcgggcaaaccaagggagagcttgcggattattaccgcgcgatcgcg
ccgctgatgctgccgttcgcggcgggccggccgatcagcctcgtgcgctgcccgcaggga
cgggcgcggcactgcttcttccagaagcatgacagcggctcgtttggcccgcacgtctcc
cacgtcccgatccgcgaaaaggacggcgggaccgaggattatctctacctcaccgatgcg
gacggcattctcgcctgcgtgcagatgggcacgatcgagttccacggctggggcgcgaag
gcggaggatgtggagcagcccgaccggatgatcttcgacctcgatcccgacgagggcctc
gggttcgacgaagtgaagcgcgccgcacgggacatccggcggcgactctccgacctgggg
ctggtgagcttcgcgatgctctccggcggcaagggcgtgcatgtggtggtgccgctgacg
cccgaccacgattgggaaacgcacaaggacttctcaaagcgcttcgccgaggcgctgagc
cttgccgagccggaccgcttcgtcgcgacgatgagcaaggcgaagcgcaagggccgcatc
ttcatcgactggctgcgcaaccagcgcggcagcacggcggtgctgccctattcggcccgc
gcccgcgccggcgcgccggtcgcgataccgatcagctgggaagagctggacaagatgaag
gacgcgcatcctttcagcatcagcgatgccaagaccctcatggaccgggcgcgggacaag
gcgttgcagggctgggggttcgtcacgcagagcctgccggaccactga
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