Saccharothrix syringae: EKG83_05090
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Entry
EKG83_05090 CDS
T06258
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ssyi
Saccharothrix syringae
Brite
KEGG Orthology (KO) [BR:
ssyi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyi03019
]
EKG83_05090 (hrpB)
Enzymes [BR:
ssyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EKG83_05090 (hrpB)
Messenger RNA biogenesis [BR:
ssyi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EKG83_05090 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QFZ16927
UniProt:
A0A5Q0GS89
LinkDB
All DBs
Position
complement(1069085..1071451)
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AA seq
788 aa
AA seq
DB search
MEPTDLPDLPIRPLLGDIAGTLAARGSLVLVAPPGTGKTTLVPLALPGRVVVAEPRRLAA
RAAAARMAGLLGEPVGRTVGYSVRGDRKTSKDTRVEVVTSGLLVRRLQHDPELAGVDTVL
LDECHERHLDADLLLALLLDARAGLRPDLKLLATSATLAAERLARLLGDAPVLRVEARAH
PVEVVHAPPARGERVEAAVARATRQALSEVDGDVLAFLPGVAEIRRCAALLGDVDVLPLH
GRLPASAQDEALRPGPRRRVVLATAVAESSLTVPGVRAVVDSGLARVPRVDHRRGLAGLA
TVRVSAAVADQRAGRAGREAPGRVYRCWPAHEHGTLPRYPEPEIRTADLTRLALELACWG
VPDGTGLGWWDAPPPGALDAGRSVLRALGALDGRGATERGRRMADLGLHPRLARALLDGA
AAVGAHTAAQVVALLDDDRANEGVELSVRHADPREVRRLAALVGGRNPGGERGTRGRRGT
GGDPALVVALAHPERLARRRSPGSPVYLMAGGTAVELPPGSGLADAEWLAVAVADREPGR
AHGRVRLAARADEELALTAAPALVVEEDDVRWDGDVVANRVRRLGAIPLSSKPLRDPEAL
RRALREGLRAEGVGLLRWDADGLRTRERMAFLHRVLGDPWPAVDDGALLEVVDLGDARRR
ADLQRISGEQVVRRLLPWPAAARFDELAPDRLEVPSGSRVRVDYSGPEPVLPVKVQEVFG
WTETPRLAGGRVPVVLHLLSPAGRPTAVTGDLASFWRTGYPQVRAELRGRYPKHRWPEDP
MTAPPARR
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
gtggagccgaccgacctgcccgacctgccgatccggccgctgctcggcgacatcgccggc
accctcgccgcccgcggctcgctggtgctggtcgccccgcccggcacgggcaagaccacc
ctggtgccgctcgcgctgccggggcgcgtggtggtcgccgaaccccgtcggctggccgcc
cgcgccgcggccgcccggatggcgggcctgctcggcgaaccggtcgggcggaccgtcggc
tactcggtgcgcggcgaccggaagacctcgaaggacacgcgcgtcgaggtggtcacctcg
ggcctgctggtgcggcggttgcagcacgacccggagctggcgggcgtcgacaccgtcctg
ctcgacgagtgccacgagcggcacctcgacgccgacctgctgctggcgctgctgctcgac
gcgcgggccgggctgcggccggacctgaagctgctcgccacctccgccaccctcgccgcc
gagcggctcgcgcggctgctgggcgacgcgcccgtgctgcgggtcgaggcgcgggcgcac
ccggtggaggtggtgcacgcgccgccggcgcgcggtgagcgcgtcgaggccgccgtcgcc
cgcgccacccggcaggccctgtccgaagtggacggcgacgtgctggcgttcctgccgggc
gtggcggagatcaggcggtgcgcggcgctgctcggcgacgtggacgtgctcccgctgcac
ggccggctgcccgcgtccgcgcaggacgaggcgctgcgcccgggcccgcgccgccgcgtg
gtgctggccaccgccgtcgccgagtcgagcctgaccgtgcccggcgtgcgtgcggtggtg
gactcgggcctggcgcgggtgccgcgggtggaccaccggcgcgggctggcgggcctggcc
acggtccgggtcagcgcggcggtggccgaccagcgcgcgggccgggcggggcgcgaggcg
ccgggccgggtctaccgctgctggcccgcgcacgagcacggcaccctgccccgctacccc
gagcccgagatccgcaccgccgacctgacccggttggcgttggagctggcgtgctggggc
gtgccggacgggacgggcctgggctggtgggacgcgccgccgccgggcgcgctggacgcg
ggccggtcggtgctgcgggcgctgggcgcgctggacgggcggggcgccaccgagcgggga
cggcggatggcggacctggggctgcacccgcgcctggcccgggcgctgctggacggcgcc
gcggccgtgggcgcgcacacggccgcgcaggtggtcgccctgctcgacgacgaccgcgcg
aacgagggggtcgagctgtcggtgcgccacgccgacccgcgcgaggtgcgcaggctggcc
gcgctggtcggcgggcggaaccccggcggtgaacggggcacccgcggccggcggggcacc
ggcggcgacccggccctggtcgtggccctggcgcaccccgagcggctggcccgcaggcgc
tcccccggctccccggtctacctgatggcgggcggcacggcggtggagctgccgccgggc
agcggcctggccgacgccgagtggctggcggtggcggtggccgaccgggagccgggtcgc
gcgcacgggcgggtccggctggccgcccgcgccgacgaggagctggccctgaccgccgcg
cccgcgctggtggtcgaggaggacgacgtgcgctgggacggcgacgtggtcgccaaccgg
gtgcgccggctgggcgcgatccccctgtcgagcaagccgctgcgcgacccggaggccctg
cgccgggccctgcgcgagggcctgcgcgccgagggcgtcggcctgctgcggtgggacgcg
gacggcctgcgcacccgcgagcggatggcgttcctgcaccgcgtgctgggcgacccgtgg
cccgccgtcgacgacggggcgctgctggaggtggtcgacctcggcgacgcgcgccgcagg
gccgacctccagcggatcagcggcgagcaggtggtgcggcggctgctgccgtggcccgcg
gcggcgcgcttcgacgagctggcgcccgaccggctggaggtgccgtccggctcccgcgtc
cgggtcgactactcgggacccgaaccggtgctgccggtgaaggtgcaggaggtgttcggc
tggaccgagaccccgcgcctggccggcggccgggtgccggtggtgctgcacctgctgtcc
cccgccgggcggccgacggccgtgaccggtgacctcgcctcgttctggcggaccgggtac
ccgcaggtcagggccgagctgcggggtcgctaccccaagcaccggtggccggaggacccg
atgacggcaccgcccgcccgccgctag
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