Streptomyces tendae: F3L20_13875
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Entry
F3L20_13875 CDS
T09112
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stee
Streptomyces tendae
Pathway
stee03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F3L20_13875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stee03400
]
F3L20_13875
Enzymes [BR:
stee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F3L20_13875
DNA repair and recombination proteins [BR:
stee03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F3L20_13875
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QER86849
UniProt:
A0A5P1YJ65
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All DBs
Position
2996283..2997209
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AA seq
308 aa
AA seq
DB search
MSDGGSRTVRAGRRRVEIHRPDKVLLPGDDDARAYTKGDLVDYHRAVARHMLPHLRGRPL
MLDRRPDGLGGPAFMQKNTPDSYPDWIRRAEVAKEGGTVTHTVCDDTATLLYLVDQAGVT
LHRWLSRADDVDRPDRLVFDLDPSGDDFEAVREAARRLGELLGELALPSALMTTGSRGLH
VIVPLDGSEDFDAVREFAREVADTLADAHPDRLTTAARKKDRGDRLYLDVGRNAYAQTAV
APWTVRALPGAPVATPITWDQLDDPELHARRWTVENAVEQAGAGPWSGLSRRGRSLAPAR
RRLAALRG
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacggcgggtcgcgcacggtacgggccggccgccgccgggtggagatccaccgc
ccggacaaggtgctcctcccgggcgacgacgacgcccgcgcgtacaccaagggcgacctc
gtcgactaccaccgggccgtcgcccggcacatgctgccgcacctgcggggccggccgctg
atgctggaccggcggcccgacggcctcggcggaccggcgttcatgcagaagaacaccccc
gacagctatccggactggatcaggcgggccgaggtcgccaaggagggcggcaccgtcacg
cacacggtgtgcgacgacaccgccaccctcctctacctggtcgaccaggcgggcgtcacg
ctgcaccgctggctctcccgcgccgacgacgtggaccgccccgaccggctggtcttcgac
ctcgacccgtccggcgacgacttcgaggcggtgcgggaggccgcccgccggctgggggag
ctgctcggcgaactcgccctgccctccgccctgatgaccaccgggtcccggggcctgcac
gtgatcgtgcccctggacggcagcgaggacttcgacgccgtacgggagttcgcccgcgag
gtcgccgacacgctggcggacgcccaccccgaccggctcaccaccgcggcccgcaagaag
gaccgcggcgaccggctgtacctcgacgtggggcgcaacgcctacgcgcagaccgccgtc
gccccctggaccgtccgtgccctgcccggcgcccccgtcgccaccccgatcacctgggac
cagctcgacgatcccgagctgcacgcccgccgctggacggtggagaacgccgtcgagcag
gccggcgccggcccctggtccgggctgtcgcgcaggggacgctccctcgctcccgcgcgc
cgccggctcgccgccctgcgtggttga
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