Stenotrophomonas sp. MYb57: CLM74_00130
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Entry
CLM74_00130 CDS
T05384
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stem
Stenotrophomonas sp. MYb57
Pathway
stem03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CLM74_00130 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stem03400
]
CLM74_00130 (ligD)
Enzymes [BR:
stem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CLM74_00130 (ligD)
DNA repair and recombination proteins [BR:
stem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CLM74_00130 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
SPOR
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AVJ31299
LinkDB
All DBs
Position
26602..29079
Genome browser
AA seq
825 aa
AA seq
DB search
MSLHQYRRKRRLGGGSGQTPEPDDAPARGNPKRRPVFVVQLHHASSRHYDFRLEMDGVLK
SWAVPKGPSLRVGEKRLAVEVEDHPLSYAGFEGDIPQGHYGAGHVDVFDHGSWACEGDPL
QALAAGKIDFVLHGQRLAGGWKLVRTAMKGRQVQWLLIKRDDAQARDAEADDLLHTPALK
SAKRSRVSAKETAPAPRAAHPRKADARWHARALQLDGARDRSYPHQFKPQLTDHRDTAPD
GERWLHEIKWDGYRLLADLHEGEVTLRSRNGLDWTADFPEVVQALQALPVRDARLDGELV
VLDDNGRSDFAALQRVIDGSSKQPLRYIVFDLPGVAGVDISRAPLLQRKALLKELIGDTV
GTLAFSEHVIDHGPAVFEASGKAGFEGIVSKQVDAPYVNTRARSWVKVKHEDTDEFLIIG
HTAPKGSRVGFGSLLLATPDKGGLRYVGRVGTGFDDEGLRALAATLAPLAVKEAVLPLPA
HVPLRAASVRWVKPVTVAEVAFRGWGKEGLLRQASFKRLRSDKKKEDLAMSATPADDGDD
VAITHPERVVFAKKKLSKGDVADYYRQMARWILPEISGRPLSLLRCPDGVGKACFFQKHH
GQGLGDAVHAVPLQQKSGREDYVYIDDERGLLQLVQMNTLELHPWGATVADPEHPDRLVF
DLDPGEGVSWADVKRGARDVRDRLQQTGLQSFVRLSGGKGVHVVVPLQPAADWDDAKAFC
EAFAQAMAEQAPDRYVATMSKAKRSGVIFIDWLRNTRGATSVCSWSLRARESAGVAVPLR
WEELARVSAADAFPMDKALARAKRLKADPWQGIDALKQTLPTLQR
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgcatcagtaccgccgcaagcgtcggctgggcggggggagtggacagaccccg
gagccggacgatgcaccggcacgaggcaatccgaagcggcggccggtcttcgtggtccaa
ctgcaccacgccagcagccgccactacgatttccgcctggaaatggatggcgtgctgaaa
agctgggcggtgccgaaggggccgtcgctgcgagtgggtgagaagcgcctggcggtggag
gtggaagaccatcccctgtcctatgccggcttcgaaggtgatattccgcaaggccattac
ggcgccggccacgtcgatgtgttcgaccacggcagctgggcctgcgaaggtgatccgttg
caagcactggcggcgggcaagatcgacttcgtgctgcacgggcagcgcctggccggtggc
tggaagctggtacgcacggcgatgaagggccgccaggtgcagtggctgctgatcaagcgc
gatgacgcgcaggcacgggatgcggaggcggacgatctgctgcacacgccagcgctgaaa
tccgcgaagaggtcccgggtttcagcgaaggagacggctccagcgccacgtgccgcacac
ccacgcaaggccgatgcacgctggcatgcgcgcgcgctgcagctggacggagcgcgcgac
agaagctacccgcaccagttcaagccacagctcaccgatcaccgcgacaccgcgcccgat
ggcgagcgttggctgcatgagatcaagtgggatggttaccggttgctggccgatctgcac
gaaggtgaggtgacgctgcgctcgcgcaatggcctggactggactgccgattttcccgaa
gtggtgcaggcgctgcaggcgctgccggtgcgcgatgcgcgtctggacggggaactggtg
gtgctggacgacaacggccgcagcgacttcgccgcgctgcagcgggtgatcgacggcagc
tcgaagcaaccgctgcgctacatcgtgttcgacctgccgggcgtggccggggtcgacatc
agccgtgcgccgctgctgcaacgcaaggcactgctgaaggaactgatcggcgatacagtt
ggcacgctggccttcagcgagcacgtcatcgaccacggccctgccgtgttcgaagccagc
ggcaaggcgggcttcgaaggcatcgtcagcaagcaggtcgatgcgccttacgtgaacacc
cgcgcacgcagctgggtgaaagtgaagcatgaggacaccgatgaattcctgatcatcggc
cacaccgcacccaaaggctcgcgggtgggattcggttcgctgctgctggccacgccggac
aagggcggcctgcgctatgtcggccgcgtcggtaccggcttcgacgatgaggggctgcgc
gcgctggcggccacgctcgcgccgctggcggtgaaggaggcggtgctgccgctgccggcg
cacgtgccgttgcgtgcggcgagcgtgcgctgggtcaagccggtgacagtggccgaggtc
gcgttccgcggctggggcaaggaagggttgctgcgccaggccagcttcaagcgactgcgc
agtgacaagaagaaggaggacctggcgatgagtgcaacaccggccgatgacggcgacgac
gttgccatcacccatcccgagcgcgtggtgtttgcgaagaagaaactcagcaagggtgat
gtcgccgactactaccggcagatggcgcgctggatcctgccggaaatcagtgggcgaccg
ctgtcgctgctgcgctgtcccgacggcgtaggcaaggcgtgtttcttccagaagcaccat
ggccagggcctgggtgatgcggtgcatgcggtgccgctgcagcagaagagcgggcgcgag
gactacgtctatatcgatgacgagcgcggcctgctgcagctggtgcagatgaacaccctg
gaactgcatccatggggcgcgacggtggccgatcccgaacatcccgaccggctggtgttc
gatcttgatccgggtgagggcgtgagctgggccgacgtgaagcgcggcgcgcgcgatgtg
cgcgatcgactgcagcaaaccgggctgcagagcttcgtgcggctgtcgggcggcaagggc
gtgcatgtggtggtacccctgcaacccgcagccgactgggacgacgcgaaagcgttctgc
gaagcgttcgcgcaggcgatggccgaacaggcgccggaccgctacgtggcgacgatgagc
aaggccaagcgcagcggggtgatcttcatcgactggctgcgcaatacacggggagcgacc
agcgtgtgctcgtggtcgctgcgcgcgcgggagagcgcgggagtcgcggtgccgctgcgc
tgggaagagctggcgcgcgtgagcgcggccgatgcgtttccgatggacaaggcgttggca
cgggcgaagcgtttgaaggcggatccgtggcagggcatcgacgcgctgaagcagacgctg
ccgacgctgcagcggtag
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