Sphingopyxis terrae: AOA14_14085
Help
Entry
AOA14_14085 CDS
T04307
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ster
Sphingopyxis terrae
Pathway
ster03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ster00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AOA14_14085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ster03400
]
AOA14_14085
Enzymes [BR:
ster01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AOA14_14085
DNA repair and recombination proteins [BR:
ster03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AOA14_14085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMU95739
UniProt:
A0A142W185
LinkDB
All DBs
Position
2957753..2960260
Genome browser
AA seq
835 aa
AA seq
DB search
MTRADPLAQYNKKRDFKLTPEPAGKVAKGGGNRFIVQKHDATRLHYDFRLEVDGVLKSWA
VTKGPSANPDDKRLAVRTEDHPMAYADFEGVIPKGEYGGGSVMLWDRGTWAPVAGKSAKD
LEKGHLHFTLDGERMKGEWLLVRMKPRAGEKRENWLLRKIDDAYAGGSDDLTGRYLTSVL
TDRPMAEIAGDEDGEQSLKGAKGEAFAKKMAAAAAHNRKVAKGSKAGAKPPKFRKLQLAT
LVDSVPAGNNWFYEIKFDGYRALVAAAGDQVVVYTRSGLDWTDKFAPLARHIAALDLPPC
LIDGEIVAYGKDGNPDFSSLQAVLKRGHGAQDEATDLHFFAFDLLEENGKSLTALGNLER
KERLEALLRDAAPPIAVADHVIGAGEKLYEAMCGAGQEGIIAKRADAPYAGRRSKNWVKV
KCTRRQEFIIVGWKESSAKARPFGSLLLAQREKGELVYKGNVGTGFDADTMAMLAAKFAG
RARKTAPVDVDKAAARKVHWVRPDLVAEIAFAEYTASGSVRHASFVGLRADKEAKDVKPE
TKAKAPSPVSDVKISSRDRVIFPEAKATKGDLADYYAAVAPVMLPHLARRPASLVRCPQG
RAKQCFFQKHDSGSFGPHVHHVPIEEKDGGVEDYLYVEDADGILACVQMGTIEFHGWGSH
VDTLEQPDRMVFDLDPDEGLDFADVKKAAADLKRQLADIGLVSFAMLSGGKGVHVVVPLD
PGHSWDAHKDFAKRFAEAMSLAEPDRFVATMSKAKRKGKIFIDWLRNQRGSTAIMPYSAR
ARAGAPVAVPIDWDGLAAIDSARHWTIADARALLDRAASPTLKGWGFARQTLPAI
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgacccgtgccgaccctctcgcccaatataacaagaagcgcgatttcaagctgaccccc
gaacccgcgggcaaggtcgcgaaggggggcggcaatcgcttcatcgtccagaaacacgac
gcgacgcgcctccattacgacttccggctcgaagtcgatggcgtgctcaagagctgggcg
gtcaccaaggggccgagcgcgaaccccgacgacaagcggctcgcggtgcgcaccgaagat
catccgatggcctatgccgatttcgagggggtgatccccaagggcgaatatggcggcggt
tcggtgatgctgtgggatcgcggcacctgggcgccggtcgcggggaagagcgcgaaggat
ctggaaaagggccatcttcacttcaccctcgacggcgagcggatgaagggcgaatggctg
ctcgtccgcatgaagcctcgcgccggtgaaaagcgcgagaactggctgcttcgcaagatc
gacgacgcctatgcggggggcagcgacgacttgaccggccgctacctcaccagcgtcctc
accgatcgcccgatggccgagatcgcgggcgacgaagacggcgagcaatcgctgaagggc
gcaaagggcgaagcgttcgcgaagaagatggcggcagcggcggcgcacaatcgcaaggtc
gccaaaggctcaaaagccggcgccaagccgcccaaattccgcaagctgcagctggcgacg
ctcgtcgacagcgtgccggccggcaacaactggttctacgagatcaagttcgacggttat
cgcgcgctcgtcgccgcggcgggggatcaggtcgtcgtctacacgcgcagcgggctcgac
tggaccgacaagttcgccccgctcgcccgccatatcgccgcgctcgacctgccgccgtgt
ctgatcgacggtgagatcgtcgcctatggcaaggacggcaaccccgacttctcctcgctc
caggcagtcctgaaacgcggccacggcgcgcaggacgaggcgaccgacctgcatttcttc
gccttcgacctgctcgaagagaacggcaagtcgctcaccgcactcggcaatctagaacgc
aaggaacgtctcgaggcgctgctccgcgatgcagcgccgccgattgcggtcgccgatcat
gtcatcggcgcgggcgaaaagctctatgaggcgatgtgcggcgcagggcaggagggcatc
atcgccaagcgcgccgatgcaccctatgccggccgccggtcgaaaaactgggtgaaggtc
aaatgcacccgccgccaggaattcatcatcgtcggttggaaggagagttcggcgaaggca
cgtcccttcggctcgctacttctcgcgcagcgcgaaaagggcgagcttgtctacaagggc
aatgtcggcaccggcttcgatgccgatacgatggcgatgctcgcggcgaagttcgcgggc
cgcgcgcgcaagacggcgccggtcgatgtcgacaaggcggcggcgcgcaaggtccattgg
gtaaggcccgaccttgtcgccgagatcgctttcgccgaatataccgccagcggctcggtc
cgccacgcaagcttcgtcgggctgcgcgccgacaaggaggcgaaggacgtgaaacccgaa
accaaggccaaggctcccagcccggtcagcgacgtgaagatcagcagccgcgaccgcgtc
atcttccctgaggcaaaggcgacgaagggcgacctcgccgactattatgccgcggtggcg
ccggtcatgctcccccacctcgcgcgccgcccggccagcctggtccgctgtccgcaggga
cgcgcgaagcaatgcttcttccagaagcatgattcaggctctttcggcccgcacgtccac
cacgttccgatcgaagagaaggacggcggcgttgaggattatctctatgtcgaggatgcg
gacggcatcctcgcctgcgtccagatggggacgatcgaatttcacggctggggcagccac
gtcgatacgctcgaacagccggaccgcatggtcttcgacctcgaccccgacgaagggctc
gacttcgccgacgtcaaaaaggccgcggcggatttgaagcgccaactcgccgacatcggc
ctcgtcagcttcgcgatgctctccggcggcaagggcgtccatgtcgtcgtgccgctcgat
ccggggcacagctgggacgcgcacaaggattttgcgaagcgctttgccgaggcgatgagc
cttgccgaacccgatcgtttcgtcgcgacgatgagcaaggcaaagcgcaagggaaagatc
ttcatcgactggctgcgcaaccagcgcggcagcaccgcaatcatgccctattcggcgcgg
gcgcgggctggggcgcccgtggcggttcccatcgattgggacgggctggccgccatcgac
agcgcgcgccactggacgatcgcagacgcccgcgccttgctcgatcgcgccgcgagcccg
acgctgaagggatggggatttgcgcggcagacgctgcccgcgatctga
DBGET
integrated database retrieval system