Symbiobacterium thermophilum: STH1795
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Entry
STH1795 CDS
T00196
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sth
Symbiobacterium thermophilum
Pathway
sth03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
STH1795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sth03400
]
STH1795
Enzymes [BR:
sth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
STH1795
DNA repair and recombination proteins [BR:
sth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
STH1795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
BAD40780
UniProt:
Q67NG3
LinkDB
All DBs
Position
complement(1938517..1939440)
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AA seq
307 aa
AA seq
DB search
MARTERRWVRVGGRELAVTNLEKPMWPADGLTKGDLISHYVSVAPYLLPYLRGRPVVLTR
YPHGVGGKWFYQKDAPQGLPDWIPTWADRAEDGRVIRYLRIEEPAALAYVANLGAIELHP
WLSSCDSPDHPDWAVIDLDPAEGATFADVLVVARLVRQILGEVQVQGFPKLSGATGVHIF
CPAAPGTTYAETAAFCEQVGRILLRAYPEKVTLERAVARRGPKVYVDYLQNRRGQTITSV
YGLRPLPGAPVSAPVTWEELEGEPPRITMRTLPARLAAVGDLFAPMLQATQDLQAATERL
RRYLTGV
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
gtggccagaaccgagaggcggtgggtacgggtcggcgggcgggagctggcggtgaccaac
ctggagaagcccatgtggccggccgacgggctgaccaagggggacctgatctcccactac
gtgtccgtggctccctacctgctgccgtacctgcgggggcggccggtggtgctcacccgt
tacccccacggagtcgggggcaagtggttttaccagaaggacgccccgcaggggctcccg
gactggattccgacctgggcggaccgggcggaggacggccgcgtcatccgctacctgcgc
atcgaggagccggcggcgctggcgtacgtggccaatctgggagccatcgaacttcacccg
tggctctcgtcctgcgactcgccggaccacccggactgggcggtcatcgacctcgacccg
gcggaaggcgccaccttcgcagacgtgctggtcgtcgcccggctggtccggcagatcctg
ggcgaggtgcaggtgcagggtttccccaagctgtcgggggccaccggcgtccacatcttc
tgtcccgcggcgccgggcacgacctacgccgagacggccgcgttctgcgagcaggtgggc
cggatcctgctgcgagcgtatccggagaaggtgacgctcgagcgcgcggtcgcacggcgc
ggaccgaaggtgtacgtggattacctgcagaaccggcgcgggcagacgatcaccagtgtg
tacggactgcggccgctgcccggggcgccggtgtccgcgccggtcacgtgggaggagctg
gagggcgagccgccgcggatcacgatgcgcaccctgcccgcgcgcctggccgcggtgggc
gacctgttcgcgccgatgctgcaggccacccaggacctgcaggcggccacggagcggctc
aggaggtatctcacaggtgtgtga
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