Streptococcus parauberis: STP_1005
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Entry
STP_1005 CDS
T01504
Name
(GenBank) UvrABC system protein B (UvrB protein)
KO
K03702
excinuclease ABC subunit B
Organism
stk
Streptococcus parauberis
Pathway
stk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STP_1005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stk03400
]
STP_1005
DNA repair and recombination proteins [BR:
stk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STP_1005
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
STP_1005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
Kinesin
AAA_5
AAA_16
AAA_22
T2SSE
UB2H
AAA_7
Microtub_bd
AAA
AAA_19
CAMSAP_CC1
TMP_2
AAA_25
PHP
FlaG
DUF87
Motif
Other DBs
NCBI-ProteinID:
AEF25453
LinkDB
All DBs
Position
complement(1068475..1070466)
Genome browser
AA seq
663 aa
AA seq
DB search
MIDKRIDKPFHLVSKYQPSGDQPQAIEELVDNIEGGEKAQILLGATGTGKTFTMSQVINR
VNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
NDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQ
LVDIQFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIESLTGKIL
GEVDHLVLFPATHFVTNDEHMETSIAKIQAELEEQLKLFESEGKLLEAQRLKQRTEYDIE
MLREMGYTNGVENYSRHMDGRAAGEPPYTLLDFFPEDFMIMIDESHMTMGQIKGMYNGDQ
ARKKMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTIIEQIIRPT
GLLDPEVEIRPSMGQMDDLLGEINTRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI
QTIGRAARNSEGHVIMYADKMTESMRKAIDETARRRQIQIDYNTEHDITPKTIKKEIRDL
IGISKGKGADVEETSPDYTAMNKSERKEAIKKLQKQMHEAAEMLDFELAAQIRDIVIELK
TMD
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgattgataaacgaattgataaaccatttcacttggtttctaaatatcaaccttctggg
gatcaaccacaagctatagaagagcttgttgataatattgaaggaggtgaaaaggcccag
attttgcttggtgcgactggtactggtaagacttttacgatgagtcaagttataaacaga
gtgaacaaacccacgcttgttatagcccataataaaactttagcgggccaattgtatggt
gaatttaaagagtttttccctgataatgctgttgagtattttgtatcttactatgattat
tatcaaccggaagcctatgtaccttctagtgatacctatattgaaaaagattcttcggtc
aatgatgaaattgataagcttcgccattctgccacatcttctttgttagaacgaaatgat
gttattgtagttgcttcagtatcatgtatttatggtttgggatcacccaaagagtatgca
gattctgccgtctctctaagacctggtcaagaaatctcacgtgatcaattattaaaccaa
ttagttgatattcaatttgaacgcaacgacattgatttccaacggggccggttccgtgtt
cgaggcgatgttgttgaagtctttccggcttctcgcgacgagcatgcctttcgtgttgaa
ttctttggggacgaaattgatcgaatcagagagattgaaagtctcacaggcaagatactt
ggcgaagttgaccacctagtgctcttcccagccacccactttgtgactaatgatgaacac
atggagacctcgatagcaaaaattcaagcagaactggaagagcaacttaagttgtttgaa
agtgaagggaagcttttagaagcgcagcgattaaaacaaagaacagaatatgacattgaa
atgctccgagaaatggggtatacaaatggtgtcgagaattattcgcgtcatatggatggt
cgtgctgctggtgagccgccttataccctgcttgactttttccctgaagatttcatgatt
atgattgatgaaagtcacatgactatgggtcaaatcaaagggatgtataatggtgaccaa
gcccgtaagaaaatgctagtagattatggttttagacttccttctgcgcttgataatcgt
cctttacgtcgtgaggaatttgaaagtcatgttcatcagattgtctatgtatctgccact
ccaggcgactacgagatggaacagacagatacaatcattgagcaaattatccgtccaact
ggactgttagatccagaagtcgaaattcgtccttcaatgggacaaatggatgatttactt
ggtgaaattaatacgcgagctgaaaagggtgagagaacctttattacaaccttaactaaa
aagatggcagaagatttaacagactatcttaaagagatgggggttaaggtcaagtatatg
catagtgatattaaaacactagaacgaacagagattattcgtgatcttcgtttaggggta
tttgatgtcttaattggaattaacttattgcgtgaaggaattgacgttccagaagtaagt
ttagttgctattttagatgctgataaagaaggtttcttacgaaatgaacggggtctgatt
cagacgattggtcgtgcagctcgtaactccgaaggacatgttattatgtatgctgataaa
atgactgaatctatgcggaaagctattgatgaaactgctcgtcgtcgtcaaatccagatt
gactataacacagaacatgacattacgccaaaaacaattaaaaaagaaattcgtgattta
attggtatcagtaaaggcaaaggtgctgatgtagaagaaacaagtcctgactacactgca
atgaacaaatcagaacgtaaagaagccattaagaaattgcaaaaacaaatgcatgaagca
gccgaaatgcttgatttcgaattggcggcccaaattcgtgatattgtcattgaattaaaa
acaatggattaa
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