Sphaerodactylus townsendi (Townsend's least gecko): 125444006
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Entry
125444006 CDS
T08213
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04510
Focal adhesion
stow04512
ECM-receptor interaction
stow04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125444006 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125444006 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125444006 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
stow00536
]
125444006 (COL1A1)
Glycosaminoglycan binding proteins [BR:
stow00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125444006 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
125444006
NCBI-ProteinID:
XP_048372402
LinkDB
All DBs
Position
LG15:complement(16744992..16899581)
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AA seq
1539 aa
AA seq
DB search
MALCAIKVADPWVMPRLGVTVGSVALATFNLVTLRNLSSKKDFISFTTLWTLPNERLRVG
NLHNLQRRHHQEENAISLKRQDFGKEGLAEEAAFSDSPSSLGGQQRVNISTPRDTERNKQ
EIGFQVRLAKISSDLIIRAFCGFAEKCHIPARSWQSSCGFGDFNWVARPKRTAVVIDGSP
AYVGAGGVEGPKGDQGPRGDRGPAGPPGRDGIPGQPGLPGLPGPPGPPGLGGNFAPQLSY
GYDEKSGGGMAVPGPMGPSGPRGLPGPPGSPGPQGFVGPAGEPGEPGASGPMGPRGPAGP
PGKNGDDGESGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDSGPAGP
KGEPGSPGENGAPGQVGPRGLPGERGRPGAPGSAGARGNDGAAGAAGPPGPTGPAGPPGF
PGAVGPKGETGPQGARGGEGPQGARGEPGPAGPAGAAGPSGNPGSDGQPGAKGANGAPGI
SGAPGFPGARGPAGPQGPSGGPGPKGNSGEPGAPGNKGDTGAKGESGPAGVQGPPGPPGE
EGKRGSRGEPGPAGLPGPAGERGAPGGRGFPGSDGIAGPKGPPGERGGPGVAGAKGSPGE
AGRPGEPGLPGAKGLTGSPGSPGPDGKTGPTGPAGQDGRPGPSGPPGARGQAGVMGFPGP
KGAAGEPGKPGERGAPGPVGAVGVPGKDGEVGAQGAPGPAGPAGERGEQGPAGSPGFQGL
PGPAGASGESGKPGDQGPPGDVGAPGPSGSRGERGFPGERGVQGPPGPQGPRGANGAPGN
DGAKGDAGAPGGPGSQGAPGLQGMPGERGAAGLPGAKGDRGDAGPKGIDGASGKDGIRGL
TGPIGPPGPAGSPGDKGEAGPSGPAGPTGGRGAPGERGEPGPAGPAGFAGPPGADGQPGA
KGEPGDSGAKGDAGSPGPSGATGPPGPAGAVGAPGPKGARGNAGPPGATGFPGAAGRVGP
PGPSGNVGLPGPPGPGGKEGGKGPRGETGPAGRPGEAGPAGPPGPAGEKGSPGSDGPAGA
PGTPGPQGIAGNRGMVGLPGQRGERGFSGLPGPSGEPGKQGPSGPNGERGPPGPAGPPGL
AGPPGESGREGSPGAEGAPGRDGSAGPKGDRGETGPSGPPGAPGAPGAPGPVGPAGKNGD
RGESGPAGPAGPAGPAGARGPAGAPGARGDRGETGEHGDRGMKGHRGFSGLQGPPGPPGS
SGEQGPSGAAGPAGPRGPPGSAGSAGKDGMNGLPGPIGPPGPRGRTGDVGPAGPPGPPGP
PGPPGPPSGGFDFSFLPQPPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENI
RSPEGTRKNPARTCHDLKMCHGDWKSGEYWIDPNQGCNLDAIKVYCNMDTGETCVYPTQS
TVSQKNWYINKNPKEKKHVWFGEEMTDGFQFEYGSEGSNAADVAIQLTFLRLMSTEASQN
ITYHCKNSVAYMDQQTGNLKKALLLQGSNDIEIRAEGNSRFTYGVSEDGCTSHTGSWGQT
VIEYKTTKTSRLPVIDVAPIDVGAPDQEFGLEIGPVCFL
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atggctctatgtgcgataaaggttgccgacccctgggtcatgccaaggctgggagtgaca
gtgggttcagtagccttagcgacattcaacttagtgacattgaggaatctttcctcaaag
aaagactttatctcattcaccaccctctggactttgcccaatgagagattaagggtggga
aatttgcacaaccttcagagacgtcaccaccaggaagagaacgccatctcacttaagagg
caagactttggaaaagagggtttggctgaggaggcagccttctccgactccccgtcttct
cttggtggacagcagcgagtcaatatcagcacacccagagacactgaaaggaataagcag
gaaattggtttccaggtccggctggctaagatctcctcagatttgatcatcagggccttt
tgcggttttgctgaaaagtgccacatcccagcccggagctggcagagttcctgtggcttt
ggagacttcaactgggttgcaagacccaaaagaactgccgttgttattgatggctctcct
gcctacgtaggagctggtggtgtagagggtcctaaaggagatcaaggcccaagaggagat
aggggaccagctggcccacctggcagagatggtattcccggacaacctggacttcctgga
ctcccaggcccacctggacccccaggccttggcggaaacttcgctcctcagctgtcctat
ggctatgacgagaaatctggtggtggtatggcagttccaggaccaatgggtccatcaggt
ccccgtggtcttcctggtcctcctggcagccctggcccacaaggtttcgtcggtcccgct
ggtgaacccggagagcccggagcttctggtccaatgggtccccgtggtccagccggccct
cctggcaagaacggagatgatggtgaatctggaaaacctggccgtcctggtgagcgtggt
cctcctggcccacagggagcccgtggtcttcccggaactgctggtcttccaggcatgaag
ggacacagaggtttcagtggtcttgatggtgctaagggtgactctggtccagctggtccc
aagggtgaacctggcagccctggtgagaatggtgcccctggacaagtcggcccacggggt
cttcctggtgagagaggccgccctggtgctcctggttctgctggtgctcgtggtaacgac
ggtgctgccggtgctgctggccccccaggccccactggtccagccggtccccctggcttc
cctggtgctgttggccctaagggtgaaactggtccccaaggtgcccgtggtggtgaaggc
ccacaaggtgctcgtggtgaacctggccctgctggacctgctggtgctgccggaccttct
ggtaaccctggtagcgatggccaacctggtgccaaaggggccaacggtgctcctggtatt
tctggcgctcctggtttccctggcgcccgtggcccagctggacctcagggccccagtggt
ggtcccggtcccaagggtaacagcggcgaacctggtgctcctgggaacaaaggtgatacc
ggagccaaaggagaatctggccccgctggtgtccaaggaccccctggcccccctggtgaa
gaaggcaagagaggatcccgtggtgagcctggacccgctggcttgcctggacctgctggc
gaacgtggtgcccccggaggccgtggtttccctggctcagatggcattgctggtcccaag
ggtcctcctggtgaacgtggaggtcctggagttgctggtgccaaaggatctcctggtgaa
gctggacgccccggtgaacctggtctccctggagccaagggtctgactggtagccctggt
agccctggccccgatggcaagactggacccactggccctgctggtcaagatggtcgccct
gggccttccggtcctcctggagcaagaggtcaggctggagtgatgggattccctggacct
aaaggtgctgctggtgagcctggcaaacctggcgagagaggcgctcctggacccgttggt
gcagttggtgttcctggaaaagatggcgaagttggtgctcagggagctcctggcccagct
ggccctgctggagaaagaggtgaacaaggtccagctggatctcctggattccaggggctt
cccggtcctgctggtgcttctggtgaatctggaaaacctggtgaccagggtcctcctggt
gacgtcggtgctcccggtccatctggctcaagaggtgagagaggtttccccggtgaacgt
ggtgtccaaggtcctcccggtccacagggccctcgtggtgctaatggtgctcctggtaac
gatggtgctaagggtgatgctggtgcccctggtggccccggaagtcaaggtgcccctggt
cttcagggaatgcccggtgaacgtggtgctgctggacttcctggtgccaagggagacaga
ggtgatgccggtcctaaaggtattgatggtgcttctggcaaagatggaattagaggattg
actggacctattggcccacctggacccgctggttctcctggcgacaagggtgaagccggc
ccctcaggacccgcaggccccaccggtggtcgtggtgctcccggagagcgtggtgaacca
ggccctgctggacccgctggattcgctggcccccctggtgccgatggacaacccggtgct
aaaggtgaacctggagattctggtgctaaaggtgatgctggttcccctggaccttctgga
gccaccggacctcccggacctgctggtgctgtcggtgctcctggacccaaaggtgctcgt
ggcaatgctggaccccctggtgctactggattccccggagctgctggaagagttggaccc
cctggcccatctggtaacgtaggtcttcccggcccaccaggccctgggggcaaggaaggg
ggcaagggacctcgtggtgagactggacctgctggccgccctggtgaagcaggacccgct
ggcccacctggacctgctggtgagaagggatctcccggttctgatggacccgctggagca
cctggaactcctggcccacaaggtattgctggaaaccgtggtatggttggtcttcctgga
caaagaggcgagagaggtttctccggtcttcctggaccctctggcgaacctggcaaacaa
ggcccatccggacctaatggtgaacgtggtcctcctggcccagccggacctcctggattg
gctggaccccctggtgaatctggacgtgagggatctcctggtgcagaaggtgctcctggg
cgtgatgggtctgccggtcctaagggtgatcgtggtgaaaccggcccctctggtccccca
ggcgctcccggtgcccctggtgctcccggccctgttggccctgctggcaagaatggcgac
cgtggggagagtggtcccgctggccccgccggtcccgccggtcctgctggtgctcgtggc
cctgctggagccccaggtgctcgcggtgacaggggtgagactggcgaacacggtgacaga
ggcatgaagggtcacagaggtttctctggtcttcagggtccccctggcccccctggttct
tctggcgaacaaggtccttctggagctgctggccccgctggtcctagaggtccccctggg
tctgctgggtctgctggcaaagatggtatgaatggcctgcctggtcccattggcccacct
ggtccccgtggtcgcactggtgatgttggccctgctggtccacctggaccccctggccca
cctggtcccccaggtccacctagtggtggatttgatttcagcttcctgccccagcctcct
caggagaaagcccatgatggtggccgttactacagagctgatgatgccaacgtggtacgc
gaccgtgacctggaagtcgacaccaccctcaagagcctctcccagcagattgagaacatc
cgtagccctgagggaacccggaagaacccagcccgtacttgccatgacctgaagatgtgc
catggagactggaagagtggtgaatactggattgatcccaaccaaggctgcaacctggat
gccatcaaggtctactgtaacatggacactggagagacttgtgtctacccaactcagagc
accgtctcccagaagaactggtacatcaacaagaaccccaaggagaagaaacacgtctgg
tttggtgaagaaatgaccgatggcttccagtttgagtatggtagcgagggatccaacgca
gccgatgtcgccatccaactgacattcttgcgtttgatgtccactgaagcttcccagaac
atcacctaccactgcaagaacagtgtggcttacatggaccaacagactggcaacctgaag
aaggctttgctcctccaaggctccaatgacattgaaatcagagcagagggcaacagccgc
ttcacctacggagtctctgaggatggttgcacgagtcacactggcagctggggacagaca
gtcattgaatacaagacaacaaaaacttcccggttgcccgtcattgatgtggctcccata
gacgttggtgcccctgaccaggaattcggccttgagatcggaccagtctgcttcttgtaa
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integrated database retrieval system
