Salinispora tropica: Strop_3967
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Entry
Strop_3967 CDS
T00504
Name
(GenBank) DNA primase, small subunit
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stp
Salinispora tropica
Pathway
stp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Strop_3967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stp03400
]
Strop_3967
Enzymes [BR:
stp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Strop_3967
DNA repair and recombination proteins [BR:
stp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Strop_3967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ABP56397
UniProt:
A4XBU0
LinkDB
All DBs
Position
complement(4518881..4519789)
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AA seq
302 aa
AA seq
DB search
MSDRLRVDVAGRTLELSNLDKVLYPATGFTKGEVIDYYTRVAPVLLPHLSDRALTRIRFP
NGVDGSSFFEKNAPAATPSWVRTETLPVPGSAKGRETIDYVVADELPTLVWLANLAALEL
HTPQWQIGAHPDLMVVDLDPGEPAGLRQGCQVALLLRERLADDGIEAYPKTSGKKGMQLC
CPIAGTQPADVVSGYARRIAQELERAHPSLVVSKMARKLRAGKIFIDWSQNNAAKTTVAP
YSLRAQSVPAVSTPLTWAEVEAGGAGKRPSVRPYAAAEVLTRVAEQGDLLAPLLAGGPEL
PG
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaccggctccgggtcgacgtggctggccgcaccctggagttgtcgaatctggac
aaggtgctgtaccccgcgaccgggttcaccaagggtgaggtgatcgactactacacccgg
gtcgctccggtgctcctgccgcacctgtccgaccgggcgctgacccgaatccggttcccg
aacggcgtcgacggcagctccttcttcgagaagaacgcacccgcggcgacaccgagctgg
gtacgcaccgagacgttgcccgtccccggctcggcgaagggccgggagacgatcgactat
gtggtcgccgacgagctaccgaccctggtctggttggcaaacctcgccgccctcgaactc
cacacgccacagtggcagatcggggcacatccggacctgatggtggttgacctcgatccc
ggtgagccggccgggctacgccagggttgtcaggtagccctgttgctgcgggagcggctc
gccgacgacgggatcgaggcgtatccgaaaacctcggggaagaaggggatgcagctctgc
tgcccgatcgccggtacccaaccggccgacgtcgtctccggctacgcgcgacggatcgcc
caggagttggagcgggcccatccgagtctggtcgtgtccaagatggcgcgaaagctacgg
gcgggaaagatcttcattgactggagtcagaacaacgcggcgaagacgacggtggcgccg
tactcgctgcgtgcgcagtcggtgccggcggtgtccaccccgctgacctgggccgaggtg
gaggccggtggggccggcaaacggccgtcggtcaggccgtacgcggcggccgaggtgctc
acccgggttgcggagcagggcgacctgctcgccccgctccttgccggcggccccgagctg
ccgggatag
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