Salinispora tropica: Strop_3968
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Entry
Strop_3968 CDS
T00504
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stp
Salinispora tropica
Pathway
stp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Strop_3968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stp03400
]
Strop_3968
Enzymes [BR:
stp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Strop_3968
DNA repair and recombination proteins [BR:
stp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Strop_3968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
DUF5415
Motif
Other DBs
NCBI-ProteinID:
ABP56398
UniProt:
A4XBU1
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All DBs
Position
complement(4519782..4520720)
Genome browser
AA seq
312 aa
AA seq
DB search
MPGVPPKPMLATTGELPAGAGWAYEFKWDGIRALVNIGDGQHRVYARSGVQVTVAYPELA
GLPAQVDDVLLDGEVVLFGETGQPSFTALAERMHVRDRGRAARLAASLPITYLVFDLLRL
DGIDLTGYSWQRRRAVLDELGLAGPRWAVPPAFTDGPATLQAAGEHGLEGVMAKRVGSVY
RPGTRSPDWVKVKLEVTGDFVVGGWRPGARRLGGLLVGVPRSDGRLAYRGRVGGGIGAAL
ERELLRELEPLRTGASPFVGDLPREDTRAVVWVAPRVVVEVKYGQLTPDGRLRFPRVLRL
RPDKLAEEVDDV
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggcgtgccgcccaagccgatgctcgcgacgaccggggagctgccggcgggcgcg
ggctgggcctatgagttcaaatgggacggaatccgagcgctggtcaacattggcgacggt
caacaccgggtgtacgcccgctctggcgttcaggtcaccgtcgcctacccggaactggcc
ggcctgcccgcgcaggtggatgacgtcctcctcgatggcgaggtggtgctcttcggcgag
accgggcagccttcgttcacggcgctcgccgagcgaatgcacgtccgggaccggggccgg
gctgcgcggctcgcggcgtccctgcccatcacgtacctggtcttcgacctgttgcggctc
gacggcatcgacctgaccggctactcgtggcagcggcggcgagccgttctcgacgagttg
gggttggccgggcctcgttgggcggtcccgccggctttcacggacggcccggcgaccctc
caggcggcgggggagcacggcctggagggggtgatggccaaacgggtcggttccgtctac
cggccgggtacgcgttcgccggactgggtcaaggtcaagttggaggtgaccggcgacttc
gtcgtgggtggctggcggccgggagcccgccggctcggcgggctgctggtcggggtgcca
cggtcggacggccgcctcgcctaccgggggcgggtcggcggtggcatcggtgcggcgctg
gagcgggaactgctgcgcgagctggaacccctgcgcaccggtgcttcccccttcgtcggg
gaccttccccgcgaggacacccgggcggtggtctgggtcgccccccgggtcgtggtggag
gtgaagtacggccagctcaccccggatgggcgactgcgctttccccgggtgctgcggttg
cgcccggacaaactcgccgaggaggttgacgatgtctga
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integrated database retrieval system
