Streptomyces sp. CNQ-509: AA958_07440
Help
Entry
AA958_07440 CDS
T03968
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
strc
Streptomyces sp. CNQ-509
Pathway
strc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
strc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AA958_07440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strc03400
]
AA958_07440
Enzymes [BR:
strc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AA958_07440
DNA repair and recombination proteins [BR:
strc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AA958_07440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKH82090
UniProt:
A0A0F7N0D5
LinkDB
All DBs
Position
complement(1791092..1792015)
Genome browser
AA seq
307 aa
AA seq
DB search
MPVTEVEGRRLKLSNLDKVLWPEYGFTKGEALHYYAQVADVLLPHVRDRAASFLRFPDGV
DGERFFAKNAPAGTPEWVSVADVELTRSTVHHVLVQDLPTLLWAANLAALELHVPQWKAV
DPGAAPAAPVRADERLADRIVFDLDPGAPATVVECCRAALLVREALRADGLDAWPKTSGS
KGLHLYVPLAPASAEATSAYAKSLARRLEKEHPELILHRMARKLRPRKVFVDWSQNSRAK
TTVAPYVLRAQARPTVSTPLTWDEVEACADPDELVFLPGDVTERIATHGDLLAPLLDDHF
DLPDMTD
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgccggtcaccgaggtcgaaggacgccgcctgaagctcagcaacctcgacaaggtgctg
tggcccgagtacggcttcaccaagggcgaggcgctgcactactacgcccaagtcgccgac
gtcctcctgccgcacgtgcgcgaccgggccgcctccttcctgcgcttcccggacggcgtg
gacggggagcggttcttcgccaagaacgcccccgcgggcacgcctgaatgggtgagcgtc
gcggatgtcgagctgacccggagcaccgtgcaccacgtgctggtccaggacctgccgacg
ctgctctgggcggcgaacctcgccgcgctggagctgcacgtgccgcagtggaaggcggtg
gatcccggcgcggcgccggcggccccggtgagggcggacgaacggctcgccgaccggatc
gtcttcgacctcgaccccggcgcccccgccaccgtcgtcgagtgctgccgggccgcgctt
ctggtgcgcgaggcactgcgcgccgacgggctcgacgcctggccgaagacctccggctcc
aagggcctgcacctgtacgtgcccctcgcccccgcctccgccgaggccaccagcgcgtac
gcgaaatccctggcccggcgtctcgagaaggaacatccggagctgatcctgcaccggatg
gcgcggaaactgcgcccgcggaaggtcttcgtcgactggagccagaactcgcgggcgaag
accaccgtcgccccgtacgtgctgcgcgcccaggcccggccgaccgtctccaccccgctg
acctgggacgaagtggaggcatgtgcggatccggacgagctggtcttccttcccggtgac
gtgacggagcgcatcgccacgcacggtgacctgctggcgccgctgctcgacgaccacttc
gacctgccggatatgactgattag
DBGET
integrated database retrieval system
