Streptomyces sp. 769: GZL_02561
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Entry
GZL_02561 CDS
T03587
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stre
Streptomyces sp. 769
Pathway
stre03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GZL_02561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stre03400
]
GZL_02561
Enzymes [BR:
stre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GZL_02561
DNA repair and recombination proteins [BR:
stre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GZL_02561
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AJC55152
UniProt:
A0A0A8EI44
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All DBs
Position
2677049..2677981
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AA seq
310 aa
AA seq
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MIRPMLAVLGPLPPEPEQPAWAFEAKWDGARCIVNVSDDGTVRLVTRAGNDVTTSYPELG
PLGRQLRGRPAVLDGEVVVLDPAGRPDFGLLQRRMGVLNPRRTARLAMELPVQLVLFDVM
YLGGPLLDAPYHERRAVLAGLGLAGPNWSVPGYVAGHGHQAWEAALRGGLEGVMAKRLSS
PYLPGLRSPDWVKTKYQETLDVVIGGWTEGHGALGGLPGSVLAGVQEPDGLRFVGAVGSG
LSDHERRELAGYLSMIPLDHSPFVNDVELAGVHWAEPRLVAEIAFSGWTSAGRLRHPVWH
RLRPDLTWLG
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
gtgatccggccgatgctggccgtgctcgggccgctgccgcccgagccggagcagccggcc
tgggcgttcgaggccaagtgggacggggcccgctgcatcgtcaacgtctccgacgacggc
accgtgcgactggtcacccgggccggcaacgacgtcaccacgagctatcccgaactgggc
ccgctcgggcggcaactgcgcggccggcccgcggtgctggacggcgaggtggtggtgctg
gaccccgccggccggcccgacttcgggctgctgcagcggcggatgggcgtgctcaacccg
cgccgcaccgcccggctggcgatggaactccccgttcagctggtgctcttcgacgtgatg
tacctgggcgggccgctgctggacgcgccgtaccacgagcggcgggcggtgctggccggg
ttggggctggccggacccaactggtcggtgccggggtacgtggcgggccacggccaccag
gcatgggaggcggcgctgcgcggtggtctggagggcgtgatggccaagcggctgtcctcg
ccgtacctccccgggctgcgctcacccgactgggtgaagaccaagtaccaggagacgctg
gacgtcgtcatcggcggctggaccgagggacacggggcgctcggcgggctgccggggtcg
gtgctggcgggtgtacaggagccggacgggctgcggttcgtgggcgccgtgggctcgggg
ctctccgaccacgagcggcgggagctggcgggctatctgagcatgatcccgctggaccac
tcgccgttcgtcaacgacgtggagctggcgggggtgcactgggcggagccgcggctggtg
gccgagatcgccttcagcgggtggacgtcggcgggccggctccggcatccggtctggcac
cgactgcggcccgacctgacctggctgggctga
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integrated database retrieval system
