KEGG   Streptomyces sp. PAMC 26508: F750_4841Help
Entry
F750_4841         CDS       T02619                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase clustered with Ku protein
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
strp  Streptomyces sp. PAMC 26508
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:strp00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    F750_4841 (ligD)
Enzymes [BR:strp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     F750_4841 (ligD)
DNA repair and recombination proteins [BR:strp03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     F750_4841 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(5020803..5021696)
Genome map
AA seq 297 aa AA seqDB search
MTPITEVEGRRLTLSNLDKVLYPATGTTKGEVLHYYAATAARVMLPHLRDRPLSFLRYPD
GPEGLRFFTKNPPPGTPDWVRTAPVPRSDDPGARQVLAQDLPSLMWAANLVVEFHTHQWR
QDSPAVADRMVFDLDPGPPAGVVECCAVALWLRERLAGDGLSAYGKTSGSKGLHLLVPLE
PTPSGKVTAYAKKLAVEAQGALPELAVHRMTRALRPGKVFVDFSQNAAAKTTAAPYTLRA
KARPTVSAPVTWEEIEECGAPDDLVLLAGDMAARLERHGDLLAPLNDPGQAGALPGG
NT seq 894 nt NT seq  +upstreamnt  +downstreamnt
atgacgccgatcacggaggtggaggggcggcgcctgacgctcagcaatctcgacaaggtg
ctgtatccggccaccgggacgaccaagggcgaggtgctgcactactacgcggccacggcg
gcacgggtcatgctgccgcacctgcgggaccgcccgctgtcgttcctgcggtatccggac
ggccccgaggggctgcgcttcttcaccaagaacccgccgcccggtacacccgactgggtg
cgcaccgccccggtgccccgcagcgacgaccccggcgcccgtcaggtcctcgcccaggac
ctgccgtcgctgatgtgggcggcgaacctggtggtggagttccacacccaccagtggcgg
caggactcccccgccgtggccgaccggatggtgttcgacctggaccccggtccgcccgcg
ggtgtggtggagtgctgcgcggtcgccctctggctgcgggagcggctggccggggacggg
ctgtccgcgtacgggaagacctccggctccaaggggctccatctgctcgtccccctggag
ccgaccccctccgggaaggtgacggcgtacgcgaagaagctcgcggtcgaggcacagggc
gcgctgcccgaactggccgtgcaccggatgacgcgtgcgctgcgcccggggaaggtgttc
gtggatttcagccagaacgccgcggccaagacgaccgccgcgccctacaccctgcgggcg
aaggcccgcccgacggtgtccgcgccggtcacctgggaggagatcgaggagtgcggggcg
ccggacgatctcgtcctgctcgccggtgacatggccgcccgcctggagcggcacggggat
ctcctcgctccgctgaacgatcccgggcaggccggggctctccccgggggctga

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