Streptococcus thermophilus JIM 8232: STH8232_0817
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Entry
STH8232_0817 CDS
T02026
Symbol
rnr
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
stu
Streptococcus thermophilus JIM 8232
Pathway
stu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STH8232_0817 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stu03019
]
STH8232_0817 (rnr)
03016 Transfer RNA biogenesis [BR:
stu03016
]
STH8232_0817 (rnr)
Enzymes [BR:
stu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
STH8232_0817 (rnr)
Messenger RNA biogenesis [BR:
stu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STH8232_0817 (rnr)
Transfer RNA biogenesis [BR:
stu03016
]
Prokaryotic type
tRNA degradation factors
STH8232_0817 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
TnpV
Motif
Other DBs
NCBI-ProteinID:
CCC19526
LinkDB
All DBs
Position
672882..675335
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AA seq
817 aa
AA seq
DB search
MKESIINYLKEHGKSSVNDIAHALNHAGGEKFPQLIKAISAMERKRQLRFNRDGSVSLRP
KKEYPNQVTVEGVFHANKNGFGFLHVDDSEDDMFIGRNDVGHAIDGDTVAAVIKKPADRL
RGTMAEARVVEIVERSLKTVVGKFILNDEKEPYVGYIKSKNQKIQQPIYIKKGPVALEGT
EIIKVDIEKYPNRHHDYFVGSVRDIIGHQGDAGIDVLEVLESMDIVSEFPEDVMAEAEAV
PDAPSQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNYELGVHIADVSYYVTE
GSALNREAAARGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTLSAIMEITPKGKVINH
KICQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALN
FDTSEARILVNDKGMPVDIVVRERGTAERMIESFMLAANECVAEHFAKAKLPFIYRIHEE
PKAEKLQRFMDYASIFGIQIKGTANKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQAR
YSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMIREYTNNMSQETREHFEEVIPELATS
SSTLERRAIDAERVVEAMKKAEYMEEFVGQEFDGIVGSVVKFGMFVELPNTVEGLVHITT
LPEFYNYNERTMTLQGEKSGKTFRVGQPIRVKLIRADKETGDIDFQYLPSEYDITEKVDH
KARQEREEKAKSFRNRGPRRDRQNGEFESRGKRVNKRSGQDSSGYKGSYDEKRKSSKKPD
KRKNQNRPHNDNKGRESGRRKKKENKPFYKDVAKKRK
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatctattataaattatttgaaagagcatgggaaatccagtgtaaatgacatt
gcccacgctcttaatcacgctggcggtgaaaagttcccacagcttatcaaagccatatca
gctatggaaaggaagagacagttgcgctttaatcgagacggctctgtatccttacgtcct
aagaaagaatatcccaatcaggttactgtagagggtgtttttcatgccaataagaatggt
tttggtttcttacatgtcgatgacagtgaggatgacatgtttattggtcgtaatgacgtt
ggccatgccattgatggtgacactgttgccgcagttattaagaagccagcagatcgtttg
cgtgggacaatggctgaagcaagagttgttgaaattgtcgaacgctctcttaaaacggtt
gtcgggaaatttatcctcaatgacgagaaagaaccttatgtaggttacattaagtctaag
aatcaaaaaattcagcaaccaatctatatcaagaaaggaccagttgctcttgaggggact
gagattattaaggttgatattgaaaaataccctaaccgccatcacgattattttgtagga
agtgttcgagatattattggtcatcaaggagatgctggtattgatgtcttggaagttttg
gaatcaatggatattgtttcggagtttccagaagatgttatggctgaagcagaggctgtg
ccggatgcacctagtcaagaagatctaattggtcgtgttgaccttcgtcaagaagtgacc
ttcaccattgatggagctgatgccaaggacttggatgatgcagttcatattaaacgttta
ccaaatggtaactatgagctaggtgtccacattgcagatgtgtcttattatgtcacagag
ggttctgccctcaaccgtgaggctgcagcgcgtgggacttctgtttatgtgacagaccgt
gtggttccaatgttgcctgagcgtctttcaaatggtatttgttctctaaatcccaatgtt
gaccgcttgactctgtcagctattatggagattactccaaaaggcaaggtgattaatcat
aagatttgccaatctgtaattaagacaaccttccgtatgacctatagtgatgtcaatgaa
atgttggctggaaatccagaaaagattgaacagtttaagcctattatggattctgtgtca
gctatggcagaacttcataagattttagaagatatgcgcgaacgtcgtggtgcccttaac
tttgatacatctgaagctcgtatcttggttaatgataagggaatgccagttgatatcgtg
gtgcgtgaacgtgggacggctgagcgaatgattgagtcctttatgttggctgccaatgaa
tgtgtggcagagcatttcgctaaggctaagttgccatttatttaccgtattcacgaagag
cctaaagcggagaaattgcaacgctttatggattatgcttctatctttggtattcaaatc
aaaggaacagctaataagatggatcagctagacttacaagatttcatggcgcgagttcaa
ggcaaacctggagcagaagtcatgaatatgatgttgcttcgttcaatgcaacaagctcgt
tattcagaacacaatcatgggcactatggacttgcggctcagtattatactcacttcacc
agtccgatccgtcgttacccagaccttttggttcaccgaatgattcgtgagtacaccaac
aatatgtctcaagaaacgcgtgaacactttgaagaggttattccagagttagctacttca
tcttcaacccttgagcgtcgtgctattgacgctgaacgtgtcgttgaagccatgaaaaaa
gcagagtacatggaagagtttgttggtcaagaattcgatggtattgtcggaagtgtggtt
aaattcggtatgtttgtggaattgccaaataccgttgaaggtttggttcatatcacaaca
cttccagaattctacaattacaatgaacgcaccatgacccttcagggtgaaaaatctggt
aagactttccgtgttggccaacctattcgagttaagttaattcgtgcagataaggagact
ggagacattgatttccaataccttccaagtgagtacgatatcactgaaaaagtagatcac
aaggctcgtcaggaacgtgaagagaaggctaagtccttccgtaatagaggaccacgccgc
gatcgtcagaatggtgagttcgaaagtcgtggtaaacgtgtaaataagcgtagcggtcaa
gatagtagtggttacaaaggctcttatgatgaaaagcgtaagtcatctaagaaaccagac
aagcgtaagaatcaaaaccgtcctcataatgataataagggacgtgagagtggtcgtcgt
aagaaaaaagaaaacaaacctttctacaaggacgttgctaaaaaacgaaaatag
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