Streptomyces tuirus: GCM10017668_58580
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Entry
GCM10017668_58580 CDS
T07360
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stui
Streptomyces tuirus
Pathway
stui03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GCM10017668_58580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stui03400
]
GCM10017668_58580
Enzymes [BR:
stui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GCM10017668_58580
DNA repair and recombination proteins [BR:
stui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GCM10017668_58580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BCL24015
UniProt:
A0A7G1NS93
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All DBs
Position
6361867..6362796
Genome browser
AA seq
309 aa
AA seq
DB search
MSGGDATRRVRAGRRTVEVHRPDKVLFPGGGDAKEYTKADLVDYYRAVAPFMLPHLRGRP
LMLERHPDGIDGPTFMQKNTPDHYPEWIERVELAKEGGTVRHTVCNDTATLLYLADQATI
TLHRWLSRADRIHHPDRLVFDLDPPGDDFEAVREAARLLGELLDELELPSALMTTGSRGL
HVIVPLGGRHDFDEVRAFARDVADTLAGAHPDRLTTAARKKERGERLYLDIQRNAYAQTA
VAPYTVRPRPGAPVATPIGWDRLDDPELHARRWTIADAVEQARTNPWSGLLSRGRALGPA
RRRLNALRG
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
gtgagcggcggcgacgctacgcgcagggtgcgggcgggccgccgcacggtggaggtgcac
cggccggacaaggtgctcttccccggcggcggcgacgccaaggagtacaccaaggccgac
ctggtggactactaccgggccgtcgcgcccttcatgctgccgcacctgcgcggccggccg
ctgatgctggagaggcacccggacggcatcgacggcccgacgttcatgcagaagaacacc
ccggaccactaccccgagtggatcgagcgcgtcgagctggccaaggagggcggcaccgtc
cggcacaccgtctgcaacgacaccgccaccctcctctacctggccgaccaggcgaccatc
accctgcaccgctggctgtcccgcgccgaccggatccaccaccccgaccggctggtcttc
gacctcgacccccctggggacgacttcgaggccgtacgcgaggccgcccggctgctcggg
gagctgctcgacgagctggagctgccctcggcgctgatgaccacgggctcgcgcgggctc
cacgtcatcgtgccgctgggcggccggcacgacttcgacgaggtgcgcgccttcgcccgg
gacgtcgccgacaccctcgccggcgcccaccccgaccggctcaccaccgccgcccgcaag
aaggagcgcggggagcggctctacctcgacatccagcgcaacgcctacgcccagaccgcc
gtcgcgccctacacggtccggccccgccccggcgcccccgtggccacccccatcggctgg
gaccggctggacgacccggagctgcacgcccgccgctggaccatcgccgacgccgtcgag
caggcccgcaccaacccctggtcaggcctgctgagccgcggccgggcgctgggaccggcc
cggcggcggctgaacgccctgcgcggctga
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