Sceloporus undulatus (fence lizard): 121915490
Help
Entry
121915490 CDS
T07740
Symbol
COL16A1
Name
(RefSeq) collagen alpha-1(XVI) chain
KO
K24339
collagen type XVI alpha
Organism
sund
Sceloporus undulatus (fence lizard)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
121915490
NCBI-ProteinID:
XP_042295739
LinkDB
All DBs
Position
9:complement(13066771..13188471)
Genome browser
AA seq
1559 aa
AA seq
DB search
MRRTGLPIACLVGIFFGTCRGGKLLTSPEVEKCPQMQKEGLRLDQSSEEYVNITGFNLIK
RFALLKTSAIKKIRNPKGPLILRLGSTPLVRPTKQLFPLGLPDEFTLVITLLLKKQTTKE
NWYLFQVADQQGYPQFSLGINSKERSLEFQAKGQEEEFVSAIFTGKGVSSLFDLKWHKMV
LNVQSQVVSIHIDCSYISSKPLQLRRQLAMEGNAFVGLDAVQGAPVSFDIQQLHIYCDPA
MAMHEGCCEISDNGCFPEASKTRRDVEVMQSNDLIEINPQTEGKVYTRCFCLEEPQSKQE
LTSGKIGVKGDEGKTCPPCLQRSPHANETLGPPGLKGGKGERGPSGSHGSKGEKGDRGAD
CVRISPEAPLQCAEGPKGEKGERGEKGPSGLAGSLGQKGQKGEKGDYGIQGKPGSPGRDG
RPGEICVVGPKGQKGDPGFVGPEGLAGEPGPPGKPGPPGAGLPGKPGDPGGPPGPKGEKG
GSGPPGPGGSTGKPGKPGVPGLKGDKGDPCEVCPTIPAGITNAIGLPGKTGPKGEPGPPG
KPGKVEKVGSPGLKGDRGDPGLQGIKGEKGASCLSCNVAASSSQFPAKEGPKGEPGAPGT
GIPGLPGKAGPPGLAGTKGEKGDTGTAGPMGKPGLHGDKGDTGSSGVKGEKGEPCTECSA
ASLEGGKPTVAIPGPPGEKGEPGLPGIGLPGKAGKAGESGMKGQKGDAGNPGDPGTPGTP
GLPGLSGDPGVRGPSGAKGEKGDACDSCPIFTGDPSGAIGIPGKPGPKGDRGLPGVGQPG
KPGKPGLPGIQGPPGLKGLQGEPGPPGRGIQGPQGELGEKGIPGNPGPPGPRGPPGNAGE
KGGKGSPGLKGATGLPGPPGASITGPPGPEGQSGPPGAPGPSGLMGEKGARGEKGDAGEC
TCQPGSRMDPSLVGLPGAPGLWIGTSWQPQPGPQGPPGAPGPPGPPGAPGRQGIPGHNGL
PGLPGSAGDLGPLAAESIDIFKICRDCAQNPSSQVSNGVKGEKGDQGMPGAPGIDNCARC
FAQFPRAEEARGDSDNDQDCLGGPGLPGVPGLPGDRGEQGPPGSRGSPGPPGPIGTPGFP
GTPGAPGLPGLQGERGPAGFPGSKGEPGFQGQPGFPGPPGPPGFPGKAGTPGPPGPQAEK
GSEGMRGAPGMSGPPGPPGPPGMQGPPGLDGLDGKDGKPGIRGDTGPPGTPGRMGPPGFK
GKTGHPGLPXXXGDCGTAGPPGSPGRTGPEGEPGPMGPQGRPGPPGHLGPPGSPGQPGPS
GLAGVGLKGERGSPGERGLAGMPGQPGPPGHPGPPGEPGSDGQVGKEGPPGKPGPTGPAG
VKGESGSAGERGHPGERGRPGMPGGPGKSGEMGPIGPRGPSGERGQPGPPGPSGSPGTPG
LPGTMADAVNYDEIRRFIRQELNKMFDERMAYYTSRMQFPVEMASQPGRPGPPGKDGTPG
RPGPPGSPGMPGQIGREGRQGVPGMRGEPGAKGEKGDKGIGIMGETGLPGPPGIPGPPGY
GKIGLPGPMGQQGIPGIPGPPGITGPPGKAGHCNPSDCFGMMPLEQPMYQPKNMKGPLG
NT seq
4680 nt
NT seq
+upstream
nt +downstream
nt
atgaggagaactgggcttcccattgcatgcttggttggcatcttctttggcacctgcaga
ggagggaaactacttacatctccagaagtggagaagtgtccacagatgcagaaggaaggt
ctacgcttggaccagagcagcgaggaatatgtcaatatcaccggatttaatctaattaaa
cggtttgctctcctgaaaacctccgccattaagaaaatccgtaaccccaaaggcccgctg
atcctgcgtctgggcagcacccctctggttcgacccacaaaacagctgttccccttgggc
ttgccagatgaattcaccttagtgatcactctactcttgaagaagcagaccaccaaagag
aactggtacctcttccaagttgctgatcagcagggataccctcagttctccctgggcatc
aacagcaaagagcgaagcctggagttccaggccaagggccaggaggaggaatttgtcagc
gccatcttcaccggcaaaggagtctcctcgcttttcgacctgaaatggcacaagatggtt
ctcaacgtccaaagccaggtggtttccattcacatcgactgcagttacatctcatccaaa
ccgctgcagctccgccgacagctggccatggaaggcaacgcatttgtcggactggatgcc
gtacagggcgctcctgtctcgtttgatatccagcagctgcacatttactgcgacccggcc
atggcaatgcatgagggatgttgcgagatctctgataatgggtgcttcccggaagcttct
aaaacccgccgggatgtggaagtcatgcagagcaatgacctgatagagatcaacccccag
acggaagggaaagtctacacgcgttgcttctgcctggaggagcctcagagcaagcaggag
ctgacatctggaaagattggtgtgaaaggtgacgaagggaaaacgtgtccgccatgcctg
cagaggtcaccgcatgcaaatgaaacgctgggtcctccagggctgaagggtggaaaagga
gagcgtggaccatcagggagccatggatccaaaggggagaaaggcgatcgcggtgctgac
tgtgtccggatctcacctgaagccccattgcagtgtgctgaaggtccgaagggggagaag
ggcgagcgaggagaaaaggggccgtcgggattggctgggagccttggacagaagggacag
aaaggagaaaagggtgactatgggatccaaggcaaaccaggaagtccgggacgtgatggc
cgacctggagagatctgtgtggtgggacccaaaggccagaagggtgacccagggtttgtc
ggtcctgaagggcttgctggagaaccggggcctccaggaaaacctggtccacctggagct
ggacttccaggaaagccgggtgacccaggtggacccccaggtccaaaaggagagaagggt
ggttctggacctccagggcccggcggttcaactgggaagccagggaaaccaggagttcct
ggtctgaagggagacaagggtgatccatgtgaagtttgcccaactatccctgcaggaata
accaatgctattggcctccctggaaaaactgggcccaaaggggaacctggacctccaggg
aaaccgggcaaagtggagaaggttggaagtccaggcctcaaaggcgacaggggggatcct
ggactccaggggatcaaaggagagaagggtgcatcatgtctttcatgcaatgttgcagca
tcttcgtcacaatttcctgcgaaagaaggacccaaaggagaacctggagctccagggact
gggattcctggtcttcctggcaaagctggacctcctggactcgctggaaccaaaggagaa
aagggagatactggaactgcaggtcccatgggcaaaccgggactccatggggacaaaggt
gacacgggaagttcaggagtcaaaggcgaaaaaggagagccttgcactgaatgctccgca
gcttctctcgaaggtgggaagcccaccgtggccatccctgggccgccaggagaaaagggc
gaaccgggtcttcctggcatcggactcccagggaaagcaggaaaagctggagaatctgga
atgaaaggacagaagggtgatgcagggaacccaggtgatcctgggacaccaggtacgcca
ggtttgcccggtctttctggagaccctggtgtcagagggccatcaggagccaaaggcgaa
aagggtgatgcttgcgactcctgtcccatctttactggagacccttccggtgccatcggc
atccctgggaaacctggacccaagggggaccgcggacttccaggtgtgggccagccaggc
aagcctggaaaaccagggctcccaggaattcaaggacctcccggcttaaaggggttacag
ggagagccaggtccccccggaagagggatccaaggcccacaaggagaactaggggagaaa
ggcataccaggaaatcctggaccaccgggacctcgaggacccccaggaaacgctggggaa
aaaggtggcaagggatccccaggtcttaaaggtgccacaggtctccctgggcctccaggt
gccagcatcactggcccgccgggtccagaaggccaaagtggccccccgggagctcctggc
cccagtggtttaatgggtgaaaagggagccaggggcgagaagggagacgctggagaatgc
acctgccagcctggctctcgcatggaccccagtttggttggtctgccgggtgccccagga
ctgtggatcgggacttcctggcagcctcagccaggccctcagggaccaccaggtgcgccg
ggaccaccaggaccaccaggcgctccagggagacagggcatcccaggacacaatggcttg
ccaggactgcctgggtcggcgggagacttggggccattggctgctgaaagcattgacatc
tttaagatttgcagagattgtgctcagaacccgtcttcccaagtctccaatggagtcaaa
ggggaaaaaggtgaccaaggcatgcctggggccccaggtatcgataactgcgcacggtgc
tttgcccagttccccagagcagaagaggctcggggcgacagcgacaatgaccaagattgt
cttggaggtcctggccttccaggggttcctggtttacctggtgacaggggagagcaggga
ccaccaggttcaagaggctctccaggaccccctgggccaattggaaccccaggttttcct
ggaacacctggtgcacctggattacctggtctccagggggaacgtggaccagctggcttt
cctggatccaaaggagaaccgggatttcaaggccagcctggtttccccggaccaccaggg
cctcccggcttcccaggcaaagcggggacacctggacctccgggtcctcaggcagaaaag
ggtagcgaagggatgcgtggcgctccggggatgagtggtccaccggggcctccaggacct
cctggcatgcaaggcccacctggtttggacggcttagatggaaaggatggaaaaccaggt
atacggggtgataccgggcctccaggaaccccaggaagaatgggacctccaggcttcaaa
ggaaaaacaggtcatcccggcctcccagnnnnnnagggcgactgtggcacggcaggacca
ccaggcagccctgggcggactggacccgagggagagcctggcccaatgggaccccaaggc
agaccaggccctcctggtcatcttggtcctcctggaagccctggtcaacctggtccatct
ggacttgctggagttgggctgaaaggagaaagagggtcccctggagaaagaggtcttgct
gggatgccaggccaacctggacctccaggtcacccaggaccaccgggtgagccgggctca
gatggacaagtcggcaaagagggcccaccaggaaagccaggccctactggaccagctggg
gtgaagggtgaaagtggctctgccggggagagagggcaccctggagaaagaggcagacct
gggatgcccggagggccaggaaagagtggagagatgggccccattgggccacggggccca
tctggggagaggggtcagcctggacctccgggtccttcgggaagccctgggaccccagga
ttgcctgggacaatggcagatgctgtcaattacgatgaaatccggaggttcatcaggcaa
gagctgaacaaaatgtttgatgagcggatggcgtattacacttcccggatgcagttccca
gtagaaatggcatcccagccaggaaggccaggacccccaggtaaagatggcacacctggg
cggccgggaccgcctggatctccaggaatgccagggcaaattgggagagaaggacggcaa
ggtgtccccggaatgagaggtgagcctggagccaaaggagaaaagggagacaaagggatt
ggaatcatgggtgaaactggacttccaggccctccagggatcccaggaccgccaggctat
ggcaagattggtcttccagggccaatggggcagcagggtattccaggtataccaggaccc
ccggggatcaccggacctcctggaaaagcagggcattgcaacccttcagattgctttggc
atgatgcctctggagcaaccgatgtaccaacccaagaacatgaaaggcccattgggctga
DBGET
integrated database retrieval system