Sceloporus undulatus (fence lizard): 121919496
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Entry
121919496 CDS
T07740
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund04510
Focal adhesion
sund04512
ECM-receptor interaction
sund04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121919496 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121919496 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121919496 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sund00535
]
121919496 (COL9A1)
Proteoglycans [BR:
sund00535
]
Extracellular matrix (ECM) proteoglycans
Others
121919496 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
121919496
NCBI-ProteinID:
XP_042302076
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Position
1:128297032..128466107
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AA seq
932 aa
AA seq
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MQTFSLEHYGDPFCLMQYRFFCRLCCFLGFLTSTTIQQQTRFPVTFSSSPNADLCPASRI
GQDDLPGYDLISQFQLDKAASRGIIQRVVGSTTLQVAYKLGTNVDFRIPTRSLYPNGLPG
EYSILTTFRMTGNTLQKYWSIWQVLDSSGNEQVGVRFNGPAKSVEYSYKGTDGSLQTATF
LDLPYLFDSQWHKVMVGIERSSVALYIDCTLIQTLPITPRGKISVDGFTTLGKLKSNPEI
SVPFEIQWMLIHCDPQRPQRETCGELTARSSISQTIIKRGPPGAQGPPGPPGPPGVPGID
GIDGDRGPNGPPGPPGPDGEPGKTGVPGLPGVPGADGLTGPNGSPGSAGPKGQKGEPGLP
GGRGLPGKGIPGSRGPPGIAGLPGEVGRVGPSGDPGRRGPPGVPGPPGPRGTVGLHDGDP
LCPNACLPGRPGHAGLMGMKGHKGAKGESGEPGKQGHRGEEGDQGGIGDVGTQGPPGSQG
LRGITGIMGPQGDKGTRGLDGDPGPQGLPGAPGDQGQRGALGEMGPKGERGPQGVRGITG
LPGPKGEHGLPGVNGRDGIPAMPGSKGEPGKPGPPGDVGRQGIPGLPGTPGAKGVSGEKG
NAGAPGIPGVMGNSGKPGEQGPQGGEGPIGPRGPPGSRGEPGPSGPPGPPGKMGADGDLG
LPGLPGPPGLPGPRGDRGSVGEPGPKGEQGAAGGEGESGQRGDLGDMGLPGPKGSAGNPG
EPGSRGPEGSRGLPGMEGLRGPPGPRGLQGQQGAPGLPGSQGPAGREPTDAHIKQVCMRV
MQEQLAQLAASLRRPEFGAPGLPGRPGPPGSPGPPGENGFPGQMGSRGLPGLKGPPGDIG
LKGPKGETGEKGERGLPGRGPKGLPGTTGLPGEPGKASYGTDGRDGDRGPPGAAGLPGVP
GPPGPPGPPGYCEPSACTMQAGLREGKNVKGP
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgttttccttggagcattatggagacccattttgtctgatgcaatatcgattt
ttctgtcgcctgtgctgttttctggggtttctgacatcaactactattcaacagcagaca
agatttccagtaacattcagttccagcccgaatgctgatctctgccctgcatccagaatt
ggccaagatgatttaccaggctatgatctgatttcacagttccagcttgataaagctgct
tccagaggcattatccagcgtgtggtgggttccacaactttacaagtggcttacaaatta
ggcacaaatgtagacttcaggattcctactagatctttgtatccaaatggattacctggt
gaatattccattttaactacttttcgaatgactggaaatacacttcagaaatactggagc
atttggcaggttctggactcttctggaaatgaacaagttggagtgaggtttaatgggcca
gccaaatctgttgagtactcatataaaggaactgatggaagtctccagactgcaacattt
ttggatttgccatatctatttgattcccaatggcataaagttatggttggcatagaaagg
agctctgttgctctttatattgattgcactttgatccagactttgcccatcacaccaaga
ggaaagatcagcgttgatggctttaccacacttggaaaactgaaaagtaatcctgagatt
tcagttccgtttgagatccagtggatgctgattcactgtgatcctcaacgacctcagaga
gaaacgtgcggtgaacttacagccaggagctcgataagccagacaatcatcaagagaggc
cccccaggagcacaaggaccccctggccccccaggcccacctggagttcctggcattgat
ggcatagatggagacagaggacctaatggaccaccaggccctccgggtccagatggtgag
ccaggtaaaacaggggtccctggattgccaggagtaccaggagctgatggattgacaggc
cctaatggatcaccagggtcagctggcccaaagggacaaaagggtgaaccagggttgcct
ggaggtcgtggacttcctggaaaagggattcctggatctcgagggcctcctggtatagca
ggacttcctggagaagtgggcagagttgggccttctggtgatcctggaagaagaggccct
ccaggagtaccaggacctccaggacctaggggaacagttggacttcatgatggagatcca
ctgtgtcccaatgcttgtctaccaggccgaccaggacacgctgggctaatgggcatgaag
ggtcacaagggagcaaaaggagaatctggtgaaccaggaaaacaaggccacaggggagaa
gaaggtgatcaaggaggaattggtgatgttggcactcaaggccctccaggatctcaaggg
ttaagaggtataacgggcataatgggaccccaaggtgataaaggtactcggggtctggat
ggtgatcctggtccacaaggtcttcctggggctcctggtgatcaaggacaaagaggtgcc
ctgggagagatgggtcccaaaggagagagaggtcctcaaggtgtcagaggaattactggt
ctccctgggcctaaaggagaacatggtttacctggtgtcaatggccgtgatgggatccct
gccatgccaggatcgaagggtgaaccaggaaaaccaggccctccgggtgatgtaggacgt
caggggattccaggtttacctggcactcctggagcaaaaggtgtttctggtgaaaagggt
aatgcaggtgctcctggtatacctggcgtgatggggaattcgggtaaacctggagaacaa
ggaccccagggtggagaaggaccaattggacccagaggtccacctggtagcagaggtgag
ccaggtccatctggtcctccgggtccaccaggtaaaatgggtgctgatggtgacctcggc
ctcccaggtttacccggaccaccaggattgcctggtccaagaggtgacaggggttcagtt
ggtgaaccagggcctaaaggagagcagggtgctgctggtggagaaggagagtctggacaa
agaggcgaccttggtgacatgggtttgccaggccctaaaggatctgctgggaatcctgga
gaacctgggtcacgtggacctgaaggaagtcgtggtttgcctggcatggaaggattgcgg
ggcccacctggtccccgtggtttacaaggtcaacaaggtgctccaggtctgcctggtagc
cagggtccagctggcagagagccaactgatgcccacattaagcaggtttgcatgagagta
atgcaagaacaactggctcaattggctgccagccttcggcgaccagaatttggtgcccca
ggtctcccaggacgccctggaccacctggttcccccggacctcctggagaaaatggcttc
ccaggccaaatgggatcccgaggtctgcctggccttaaggggcctcctggtgacattgga
ctgaaaggccccaaaggtgaaacgggtgaaaagggggagagaggactcccaggtcgagga
cccaaaggcttacctggaacaacaggacttccaggagagccaggcaaggccagctatggc
acagacggacgagatggcgaccgaggcccacctggagcagctggcctacctggggttccg
ggtccccctggtcctccaggtcctcctggttactgtgagccatcagcctgcactatgcaa
gctggactgagagaaggcaagaatgtgaaagggccatga
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