Candidatus Solibacter usitatus: Acid_5076
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Entry
Acid_5076 CDS
T00412
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sus
Candidatus Solibacter usitatus
Pathway
sus03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Acid_5076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sus03400
]
Acid_5076
Enzymes [BR:
sus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Acid_5076
DNA repair and recombination proteins [BR:
sus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Acid_5076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Nitroreductase
Motif
Other DBs
NCBI-ProteinID:
ABJ86031
UniProt:
Q01WD4
LinkDB
All DBs
Position
6412337..6413251
Genome browser
AA seq
304 aa
AA seq
DB search
MLPAEENEIELTLGRKKLRLTNLQKLFWHEPRITKRDLLQYYVDISPYLLPHLKDRAMVM
KRYPNGSEGEFFFMKRAPEPRPSWIRTCPIEHASGSVIDFPIIQDAGCLLWVVNLGCIDL
NPWYARCDDVQRPDYLHFDLDPVPGAEFERVLETALRVREALEERGIASYPKTTGSRGIH
MYVPIKREPVQKEVWTFAKKLAFELAAQYPDLITAEYRIAKRPAGRVLVDYNQNAWGRTL
ASVYSVRPRPRAPVSTPVTWEEVERGFRMEDFRIDNMAERVRKMGDLWHPLVMQRGRLKL
ERVS
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
gtgttgccggcggaggaaaacgaaatcgaacttacgttgggccggaagaaactgcggctc
accaatctacaaaaactcttctggcacgagccacggattaccaagcgcgatcttctgcaa
tattacgtggacatttcgccttatcttctaccgcacttgaaggaccgcgcgatggtgatg
aagcggtaccccaacggctccgagggcgaattctttttcatgaaacgcgcgcccgaaccg
cgtccttcttggatccgcacctgcccgatcgagcacgcttccggctcggtaatcgacttc
ccgattattcaggacgcgggctgcctgttgtgggtggtcaacctggggtgcatcgacctg
aacccgtggtacgcgcgctgcgatgacgtacagcgtcccgactatctgcacttcgacctg
gacccggtgcctggcgcggaattcgagcgcgtcctggaaacggcgctgcgcgtgcgcgag
gcgttggaggagcgcgggattgcgagttacccgaaaaccacggggagccgcggcattcac
atgtatgtcccgatcaagcgtgagccggtccagaaggaggtgtggaccttcgcaaagaag
ctggcttttgaactggcggcgcagtatccggacctgatcacggcggagtatcgcatcgcg
aagcggccggcggggcgggtgttggtggactacaaccagaatgcgtggggacgcacgctg
gcgagcgtgtactctgtgcggccgaggccgcgcgcaccggtctcgacgccggtcacgtgg
gaagaggtagagcgcgggttccgcatggaagattttcgcatcgacaacatggcggagcgc
gtgcgcaaaatgggcgacctgtggcatccgctggtgatgcagcgcgggcggctgaagctg
gagcgcgtctcatga
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integrated database retrieval system
