Stella vacuolata: STVA_27610
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Entry
STVA_27610 CDS
T06335
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
svc
Stella vacuolata
Pathway
svc03410
Base excision repair
svc03430
Mismatch repair
svc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
STVA_27610
03430 Mismatch repair
STVA_27610
03440 Homologous recombination
STVA_27610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svc03400
]
STVA_27610
DNA repair and recombination proteins [BR:
svc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
STVA_27610
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
STVA_27610
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STVA_27610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
ThiG
Motif
Other DBs
NCBI-ProteinID:
BBK42741
LinkDB
All DBs
Position
2943170..2944948
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AA seq
592 aa
AA seq
DB search
MDGAAPTPAVLGVERSFTGRRWRSRLADDRPAYALADRFQLPEVVARVLVARGIGADQAQ
RFLAPTLRDHLPDPSHLLGMDAAAERLAQAVRAGEGIAVFGDYDVDGATSSALLVRFFRA
AGAEVRVYIPDRMTEGYGPNIPAMLQLRREGAGVAITVDCGTTAFAPLAAAREAGLDVVV
IDHHVAEPALPAAVAVVNPNRLDQVTEHRALAAVGVAFLLAIAINRTLRAAGWWRQRPEP
DLLGLLDLVALGTVCDVMPLTGLNRALVAQGLKVMARRANLGMAALADVARLDERPQAFH
LGYVLGPRVNAGGRVGRADLGTRLLSTEDPAEAAAIAAELDRFNEERRRIEGEVLAAATA
LVEQGALDPVLAVGDVGWHPGVIGIVASRLKDRFDRPAMVFAIADGVAKGSGRSIPGFDL
GAAVIAARQAGILTLGGGHAMAAGFTLPAAAIAEFGAFLCERFGACGASAGRVAEMGIDG
SLALSALDAALVARLDALGPYGAGMSEPRFALGHLKVVRADLAGQNHVRCIFQANSGERI
KGIAFRAMDGELGPALIAARGRTVHVAGRISIDNWNGGEAVQIRIDDAAPAL
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggatggcgcggccccgaccccggcggtgctgggggtcgagcggtccttcacgggccgg
cgatggcgctcgcgcctggccgacgaccgcccggcctatgccctggccgaccgcttccag
ctgccggaggtggtcgcccgggtgctggtcgcgcgcggcatcggcgccgaccaggcccag
cgcttcctggccccgacgctgcgcgaccacctgccggacccgagccacctcctgggcatg
gacgcggccgccgagcggctggcccaggcggtgcgcgcgggcgagggcatcgccgtattc
ggcgactacgacgtcgacggggccacctcgagcgcgctcctggtgcgcttcttccgcgcc
gcgggcgccgaggtgcgggtctatatccccgaccgcatgaccgagggctacggccccaac
atcccggcgatgctgcagctgcgccgggagggggcgggggtggcgatcaccgtcgactgc
ggcaccacggccttcgccccgctggcggcggcgcgcgaggccggtctcgacgtcgtggtc
atcgaccaccatgtggcggagccggcgctgccggcggcggtcgccgtggtcaatcccaac
cgcctcgaccaggtgacggagcatcgcgccctggcggcggtgggcgtcgccttcctgctg
gcgatcgccatcaaccgcacgctgcgcgcggccggctggtggcggcagcggccggagccg
gacctgctcggcctgctcgacctggtggcgctcggcacggtctgcgacgtgatgccgctg
accggcctcaaccgcgcgctggtcgcccaggggctgaaggtgatggcgcgccgcgccaac
ctcggcatggcggcgctggccgacgtggcccggctcgacgagcggccccaggcgttccat
ctgggctatgtgctgggcccgcgggtcaatgccggcggccgggtcgggcgggccgacctc
gggacccggctgctctcgaccgaggacccggcggaggcggccgccatcgccgccgagctc
gaccgcttcaacgaggagcggcggcgcatcgagggcgaggtgctggcggcggcgacggcg
ctggtggagcagggggcgctcgacccggtgctggcggtgggcgacgtcggctggcacccc
ggcgtcatcggcatcgtcgccagccggctcaaggaccgcttcgaccgcccggccatggtc
ttcgccatcgccgacggggtggccaagggctccggccgctcgatcccgggcttcgacctg
ggggcggcggtgatcgccgcgcgccaggcgggcatcctgaccctgggcggcggccatgcg
atggcggccggcttcaccctgccggccgccgccatcgccgagttcggggccttcctgtgc
gagcggttcggcgcctgcggcgccagcgccggccgggtggcggagatggggatcgacggc
agcctggccctgtcggcgctggatgcggccctggtggcgcgcctggacgcgctcgggccc
tatggcgcgggcatgtcggagccgcgcttcgcgctgggccacctcaaggtggtgcgcgcc
gacctggccgggcagaaccatgtccgctgcatcttccaggcgaactcgggcgagcgcatc
aagggcatcgcgttccgggcgatggacggcgaactggggccggcgctgatcgccgcccgc
ggccgcacggtgcacgtcgcgggccggatctccatcgacaactggaacggcggcgaggcg
gtgcagatccgcatcgacgacgccgcgccagccctctga
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