Streptomyces venezuelae: SVEN_5001
Help
Entry
SVEN_5001 CDS
T02274
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sve
Streptomyces venezuelae
Pathway
sve03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SVEN_5001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sve03400
]
SVEN_5001
Enzymes [BR:
sve01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SVEN_5001
DNA repair and recombination proteins [BR:
sve03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SVEN_5001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
CCA58287
UniProt:
F2R3R5
LinkDB
All DBs
Position
complement(5384095..5384979)
Genome browser
AA seq
294 aa
AA seq
DB search
MTPITEVEGRRLALSNLAKVIHPVTGTTKGEVLHYYATVGPAILPHLRDRPVSFLRYPDG
PDGQLFFTKNPPPGTPSWVRTTPVPRSEDPRARQVVIEDLPSLMWAANLVVEFHTPQWRA
SSPAVADRLVFDLDPGPPATVVECCRVALHLRERLAADGLEAYAKTSGSKGLHLLVAVVP
TPSADVSAYARRLAVEAEAALPGLVTHRMAKALRPGKVFVDHSQNAAAKTTATPYTLRAR
ARPAVSAPVTWDEVADCADPESLVLLMDDIAPRLERYGELLAPLFAPEHAGEVP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcacagaggtggagggacggcgcctggcgctgagcaacctggcgaaggtg
atccacccggtcaccgggaccaccaagggcgaggtgctccactactacgcgaccgtcggc
cccgcgatcctgccgcatctgcgggatcgtccggtgtccttcctgcgctatccggacggt
ccggacggccagctgttcttcaccaagaatcctccgcccggcacaccctcctgggtgagg
accacccccgtgccccgctccgaggacccccgcgcccggcaggtggtgatcgaggacctg
ccttcgctgatgtgggcggccaacctggtggtggagttccacacgccccagtggcgggcc
tcctcccccgccgtcgccgaccggctcgtcttcgacctcgaccccgggccgcccgcgacg
gtcgtcgagtgctgccgggtcgcgctgcacctgcgcgagcggctcgcggcggacggtctc
gaggcctacgccaagacctccggctcgaaggggctgcacctgctggtggcggtcgtcccg
acgccgtccgccgacgtctcggcgtacgcgcgccggctcgccgtcgaggcggaggccgcg
ctgccgggtctcgtcacccatcggatggccaaggccctgcggcccgggaaggtcttcgtc
gaccacagccagaacgccgccgccaagaccaccgccaccccctacaccctgcgggcgcgg
gcccggccggccgtctcggcgccggtcacctgggacgaggtggccgactgcgccgacccc
gagtccctcgtcctcctcatggacgacatcgcgccacgtctggagcggtacggggagctc
ctggcgccccttttcgcgcccgagcacgccggggaggtcccatga
DBGET
integrated database retrieval system
