Streptococcus viridans: NCTC3166_00208
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Entry
NCTC3166_00208 CDS
T08046
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
svf
Streptococcus viridans
Pathway
svf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
svf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC3166_00208 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svf03021
]
NCTC3166_00208 (rpoC)
03400 DNA repair and recombination proteins [BR:
svf03400
]
NCTC3166_00208 (rpoC)
Enzymes [BR:
svf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC3166_00208 (rpoC)
Transcription machinery [BR:
svf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC3166_00208 (rpoC)
DNA repair and recombination proteins [BR:
svf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC3166_00208 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
VED66424
UniProt:
A0A3S4LQE4
LinkDB
All DBs
Position
1:175239..178892
Genome browser
AA seq
1217 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGPGSFVAKMGAEAIQDLL
KQVDLEAEIAVLKEELKTATGQKRVKAVRRLDVLDAFYKSGNKPEWMVLNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDIVQNVKAAKRLVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEAGREGEGMVFKDRDEAVMALRNGYVHLHTRVGI
ATDSLNKPWTEAQQHKILLTTVGKILFNDIMPTELPYLQEPNNANLTEGVPSKYFLEPGQ
DVKVAIEQLELNVPFKKKNLGNIIAEIFKRFRTTETSAFLDRLKDLGYHHSTLAGLTVGI
ADIPVVEDKAEIIEESHKRVEQITKQFRKGMITDDERYNAVTAEWRAAREKLEKRLVDNQ
DPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVIRAITDGKEMIEPLE
ERLTGRYTKKSVKHPETGAVIVGPDTLISEDLAREIVNAGVEEVTIRSVFTCNTRHGVCR
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRVQEI
FEARNPKGEAVITEVKGEVTAIEEDASTRTKKVFVRGATGEGEYVVPYTARMKVEVGDQV
SRGAALTEGSIQPKRLLAVRDVLSVETYLLAEVQKVYRSQGVEIGDKHIEVMVRQMIRKV
RVMDPGDTDLLMGTLMDITDFTDANRDVVISGGVPATARPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPQAVNEVEIIEEVP
VTEAVTEMVESTVVEEN
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
gtggttgatgtaaatcgttttaaaagtatgcaaatcaccctagcttctccaagcaaggtc
cgttcatggtcttatggagaggtcaagaaacctgaaacaatcaactaccgtacattgaaa
ccagaacgcgaaggtctctttgatgaagtcatctttggacctacaaaagactgggaatgt
gcgtgtggaaaatacaaacggatccgttacaaaggaatcgtttgtgaccgctgtggtgtg
gaagtgacacgtgccaaggttcgtcgtgaacgcatggggcacattgagttgaaagcacct
gtatcacacatctggtacttcaaagggatcccttctcgtatgggattgaccttggatatg
agtcctcgtgcccttgaggaagtcatctacttcgcagcttatgtggtcatcgatccaaaa
gatacaccgcttgagcacaagtctatcatgaccgaacgtgaataccgtgaacgcttgcgt
gaatacggaccaggttcctttgttgccaagatgggggcagaagcgatccaagacctcttg
aaacaagtggatttggaagctgaaattgctgtcttgaaagaagaattgaagactgcaact
ggtcaaaaacgtgtgaaggctgttcgccgtttggatgtcttagatgccttctacaaatct
gggaataaaccagaatggatggtcctcaatatccttcctgttattccaccagatcttcgt
ccgatggtccaattggatggtgggcgttttgctgcctctgacttgaacgacctttaccgt
cgtgtgatcaaccggaacaaccgtttggctcgtttgcttgagttgaatgctcctgggatt
atcgtgcaaaacgaaaaacggatgctccaagaagcggttgacgctttgattgacaatggt
cgtcgtggtcgtccaatcacaggaccaggtagtcgcccactgaaatcattgagccacatg
ctcaaagggaaacaaggacgcttccgtcaaaacttgctcggtaaacgggtggacttctca
ggacgttccgttatcgccgttggtccaactcttaagatgtaccaatgtggtgtgccacgt
gaaatggccatcgagctcttcaaaccatttgtcatgcgtgaaatcgttgcgcgtgatatc
gtacaaaacgttaaagcggctaaacgcttggtagaacgtggagatgagcgtatctgggat
atcctagaagaagtcatcaaagaacacccagttctcttgaaccgcgcaccgacccttcac
cgtttgggaatccaagcctttgaacctgtcttgattgatgggaaagcccttcgcttgcac
ccacttgtctgtgaagcctacaatgccgacttcgacggggaccaaatggccatccacgta
ccgctttcagaagaagcccaagcagaagctcgtatcttgatgctggctgctgagcacatc
ttgaacccgaaagacgggaagccagttgttaccccatctcaggatatggtattggggaac
tactacttgaccatggaagaagctggtcgtgaaggcgaaggaatggtcttcaaagaccgt
gatgaagcggttatggcccttcgcaatggctatgttcacttgcatacccgcgtcggaatt
gcgaccgatagcttgaacaagccatggacagaagctcaacaacacaagattctcttgaca
actgttgggaagattctctttaacgatatcatgcctacagagcttccatatcttcaagag
ccaaacaatgccaacttgacagaaggcgttccatctaagtacttcttggagcctggtcaa
gatgtcaaagtagcgattgagcaattggaattaaacgttccattcaagaagaaaaatctt
ggaaatatcatcgcagaaatcttcaaacgcttccgtacaacagaaacatctgctttcttg
gaccgtttgaaagacttaggttaccaccactcaacccttgctggtttgacagtggggatt
gccgatattccagttgttgaagataaggctgaaatcattgaagaatctcacaaacgtgta
gaacaaatcacgaaacagttccgtaaagggatgattacagatgatgagcgctacaatgcc
gttacagccgaatggcgtgcagcccgtgagaaactggaaaaacgcttggtagataaccaa
gatccgaagaacccaatcgttatgatgatggactctggagcccgtggtaacatctccaac
ttctcacagcttgccggtatgcgtggtctgatggctgctccaaacggacggattatggaa
ttgccgatcctgtcaaacttccgcgaaggtttgtcagtactcgaaatgttcttctctact
cacggtgctcgtaaaggaatgaccgatacggctctcaagacagccgactcaggttacttg
acacgtcgtttggttgacgttgcccaagacgttattatccgtgaggatgactgtggaact
gaccgtggacttgtgatccgtgccattactgatggcaaggaaatgatcgagcccctcgaa
gaacgtttgacaggtcgttataccaagaaatcggttaaacatcctgaaacaggtgcagtc
atcgttggtccagatactttgatttcagaagacctagcacgtgaaattgtcaatgctggt
gttgaagaagtgactatccgctctgtctttacatgtaacacccgtcatggtgtctgccgt
cactgttacggtatcaacttggcgactggtgatgcggttgaagttggtgaagcagtcgga
accatcgctgcccaatctatcggggaacctggtacacagttgaccatgcgtaccttccac
acgggtggggttgcctcaaataccgatatcacgcaaggtcttcctcgtgtccaagaaatc
tttgaagcccgcaatccgaaaggggaagcggtcatcactgaggtcaaaggggaagtcaca
gccattgaagaagatgcttctacacggaccaagaaagtctttgttcgtggtgcgacaggt
gagggagaatacgttgtcccttatacagcccgcatgaaagtcgaagtgggagatcaagtc
tctcgtggtgcggcattgacagaaggatctatccaaccaaaacgtctccttgccgttcgt
gatgtcttgtctgttgaaacttacctccttgcggaagtacaaaaagtataccgtagccaa
ggggtggaaatcggtgacaaacacatcgaggtaatggtgcgtcaaatgatccgtaaggtt
cgtgttatggatccaggagatacagaccttctcatgggtaccctcatggatatcacagac
tttacagatgctaaccgtgatgtagtcatttctggtggggttcctgcaacggctcgtcca
gtccttatgggaatcaccaaggcctctcttgaaaccaatagtttcttgtcagcagcttcc
ttccaggaaacaacccgtgtcctcactgacgcagccattcgtggtaagaaagaccatctc
cttggacttaaggaaaatgttatcattggtaagattattcctgctggtacaggtatggct
cgttaccgtaacttggaaccacaagcagtcaatgaagtcgaaattatcgaagaagttcct
gttactgaagcagtaactgaaatggttgaatcaactgtagtggaagaaaattaa
DBGET
integrated database retrieval system
