Sturnus vulgaris (common starling): 106855908
Help
Entry
106855908 CDS
T08833
Symbol
COL5A2
Name
(RefSeq) collagen alpha-2(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106855908 (COL5A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
svg00536
]
106855908 (COL5A2)
Glycosaminoglycan binding proteins [BR:
svg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106855908 (COL5A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Amnionless
Motif
Other DBs
NCBI-GeneID:
106855908
NCBI-ProteinID:
XP_014736390
LinkDB
All DBs
Position
Unknown
AA seq
1496 aa
AA seq
DB search
MMAVLVQTRTFFILTALLGRFVTIKAQEVEEYEGGEDGEEMACTQNGQMYLNRDIWKPSP
CQICVCDNGAILCDEILCQDLLECENPQVPPGECCPVCPHTPRDFDPTIGRGRKGQKGEP
GIVPPVSGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGIPGQPGDPGPPGH
PTHPGPDGISRPFSAQMAGLDEKSGLGSQMGLMPGAVGPVGPRGPQGLQGKQGGAGPTGP
PGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRPGQSGEPGFPGSPGPRGFPGAPGLPGL
KGHRGLKGLDGPKGEIGAAGAKGESGPTGAMGPTGPLGPRGMPGERGRIGPQGAPGGRGQ
HGMPGKPGPMGPLGITGSPGFPGIPGLKGEAGPTGPRGPEGPQGQRGETGPQGPAGSQGL
PGAEGTDGSPGAKGPTGSPGTGGPPGLSGPPGSPGPQGSTGPPGIRGQPGDPGVPGFKGE
AGPKGEPGPQGPQGPIGPIGEEGKRGPRGDPGSVGPPGPVGERGAPGNRGFPGSDGLPGP
KGAQGERGPAGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGR
PGPAGSIGIRGQPGSMGLPGPKGSSGDPGKAGEAGNAGVPGQRGAPGKDGEVGPSGPVGP
PGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGE
RGEPGASGLQGEKGMAGGHGPDGPKGSPGPSGTPGDPGPPGLQGMPGERGIAGTPGPKGD
RGGVGEKGAEGTAGNDGARGLPGPIGPMGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGE
NGPTGAVGFAGPPGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSHGPPGPPGVPGLKGG
RGTQGPPGATGFPGSAGRVGPPGPTGAPGPAGPIGEPGKEGPPGLRGDPGSHGRVGDRGP
TGPPGGPGDKGDPGDDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGK
QGPTGPPGDKGPPGPIGQSGATGPVGEAGPEGPAGNDGTPGRDGAVGERGDRGEPGPAGL
PGSPGGPGTPGPVGPPGDAGQRGETGSRGPMGPPGRAGKRGLPGPQGPRGDKGDNGDRGD
RGQKGHRGFTGLQGLPGPPGPIGEQGSPGIPGPFGPRGPPGPVGPSGKDGSPGPLGPIGP
PGVRGTVGEAGPEGPPGEPGPPGPPGPPGHLTAAIGDIMGHYDDAMADPLPEFTEDEAAP
DDHNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPSKRSGEYWIDPNQG
CVEDAIKVYCNMETGETCISANPSTVPRKTWWASKSSELKPVWYGLDMNRGSQFVYGDTA
VTQMTFLRLLSKEASQNITYLCRNSVGYMDDQTKNLKKAVILKGANDLEIKAEGNSRFRY
TVLHDSCSKRNGNVGKTVFEYRTQNVARLPIIDIAPVDIGSTDQEFGIEIGPVCFV
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagtcttggtacaaacgagaacttttttcatcctcactgctttattaggccga
tttgtaaccataaaagcgcaagaagtggaagagtatgaaggtggagaagatggtgaagaa
atggcctgcactcagaatggacagatgtacctgaacagggatatttggaagccctcaccg
tgccaaatctgtgtctgtgacaacggagccattctttgcgatgaaatcctgtgtcaggat
ctgctggagtgtgagaacccccaggtgcccccgggagagtgctgtcctgtgtgtccccac
accccacgggattttgaccccaccattggtagaggaagaaagggacaaaaaggagaacct
ggaatagtgccacctgtgtcgggcatacgaggccgcccgggaccagccggacctccaggc
tcacaaggaccacgaggagaacgaggaccaaagggaagacctggtcctcgtggtcctcag
gggattgatggggaacctggtatccctggccagcctggtgatcctggtcctccagggcat
cccactcacccaggaccagatggaataagcaggcccttttcagctcagatggcaggactg
gatgagaagtctggacttggtagtcagatgggactgatgcctggtgcagtgggtccagtg
ggtccaagaggtcctcagggtctccaaggaaaacaaggtggtgctggccccacaggccca
cctggtgaacctggagatccaggacctatggggccaattggttctcgtggaccagaggga
cctccaggcaaacctggtgaagatggtgaacctggtagaccaggacaatctggtgagcct
ggatttccaggatctccaggccctcgaggctttcctggtgctcctggtctcccaggtctc
aaaggtcaccggggattgaaaggacttgacggtccaaaaggtgaaattggagcagctgga
gcaaagggagagtccggaccgaccggagccatgggtccaacaggtcctctaggacctagg
ggaatgccaggagaaagaggacggattggaccacagggtgcccctggtggacgtggccag
catggtatgcctgggaagccaggcccaatgggcccacttggcataactggatctccaggt
tttcctggtattcctggtctaaagggtgaagcaggtccaacaggtcctcgtggtcctgaa
ggtcctcaaggacaaagaggtgaaacaggtcctcagggcccagctgggtcacaaggtctt
cctggcgctgaagggacagatggttcccctggtgcaaagggccctactggctctccaggc
actggaggcccccctggattatcaggtccccctggttcccctgggccacagggcagcacc
ggcccccctgggattcgaggccagccgggagaccctggtgtcccaggtttcaagggagaa
gcaggacccaaaggtgaacctggcccacaaggtccccagggtcccattggccccattggt
gaagaagggaaaagaggtcctcgaggtgatccagggtcagtaggtccaccaggtcctgtt
ggagagaggggtgctcctggtaaccgtggttttccaggttctgatggcttgcctggacca
aagggagcccagggagagcgtggtcctgcaggatcttctggacctaaaggaggtcaggga
gatcctggacgtcctggtgagcctggccttccaggagcaaggggtttgacaggaaatcca
ggtgttcaaggccctgaaggaaaacttggccccttgggtgctcctggggaagatggacgt
ccaggtccagcaggttccatagggatcagaggtcagccaggcagcatgggcctgcctggg
ccaaagggtagcagtggtgaccctggcaaagctggtgaagcaggcaatgcaggagtccca
ggacagagaggagcccctggtaaagatggtgaagttggcccttctggtcctgttggccca
ccaggtctggcaggagaaagaggagaacaaggccctccaggtcctacagggtttcagggc
ttgcctgggccaccaggtcctccaggtgagggaggaaagccaggtgatcagggtgtgcct
ggagatcctggagctgttggtccactgggccccaggggagaacgtggcaatccaggagaa
aggggagagccaggtgcctcaggactccagggtgagaagggcatggctggaggccacggt
cccgatggcccaaagggaagcccaggccctagtgggacacctggtgatccagggccaccg
ggccttcagggcatgcctggagagagagggattgctggaacacctggccctaagggtgac
agaggtggtgtaggtgagaaaggtgctgaaggtacagctggcaacgatggggcaaggggt
ctccctggtccaataggcccaatgggtccagcaggtcccacgggtgaaaagggtgaacca
ggtcctcgaggtctagttggtcctcctggttctcgtggaaaccctggttcccgaggagaa
aatggcccaactggcgccgttggttttgctggccctccgggccctgatggtcagcctggt
gtgaaaggtgaacctggagaacctggacagaaaggagatgctggatctccaggaccacag
ggtcttgctgggtctcatggtcccccaggccctccaggtgtgcctggtctgaaaggtggt
agaggaactcagggtccacctggtgctactggattcccaggatctgctggaagagttggg
cctccaggacctactggagccccagggccagctgggcctattggtgagccaggaaaagaa
ggtcctccaggtcttcgtggtgatccaggttctcatggccgtgtgggagatcgagggcca
actggtcctccaggtggccctggggacaagggtgacccaggggacgacgggcagccgggc
ccggatggcccccccggtccagcaggaactactggtcagagaggaattgttgggatgcca
ggacagcgaggggagagaggcatgcctgggctgccagggcctgcaggtactccaggaaag
caaggtcccacggggccaccaggtgacaaaggtcccccaggacctattggccagtcaggt
gccactgggcctgtaggtgaagctggtccagaaggacctgctggtaatgacggtactcct
ggacgagatggagctgttggagaacgtggtgatcgtggtgaacctggccctgcaggctta
cctggttctccaggaggtccaggaactccaggtcctgttggccctccaggagatgcaggt
caaagaggagaaactggttcccgaggtccaatgggtcccccaggtcgtgcaggaaaaaga
ggtttgcctggtccccaaggacctcgtggtgacaaaggtgacaatggtgatcgaggtgat
aggggccagaaaggacacaggggtttcactggacttcaaggccttcctggccctcctggt
ccaattggtgaacagggcagtcctggcattccaggcccatttggtcctcggggtcctcca
ggtccagtgggtccttctggaaaagatggaagtcccggtccactcgggccaattgggcct
cctggtgttagagggactgtgggagaagctggacctgagggcccaccaggtgagcctggt
cctcctggccctccagggcctcctggccacctcaccgctgccatcggtgacatcatggga
cactatgacgacgccatggcggatcccctaccagagttcaccgaagatgaagcagcccct
gacgaccacaacaaaacagacccaggagtccacgccacgctgaagtccctgagcagccag
atcgagaccatgcgcagccccgacggctccaagaaacacccggcgcgcacctgtgacgac
ctgaagctgtgccacccctccaagaggagcggtgaatattggattgatcctaaccaagga
tgtgttgaagatgctataaaagtgtactgcaacatggaaactggggagacctgcatttct
gccaacccatctactgtgccccgcaaaacatggtgggccagcaagtcctctgaattaaag
cctgtttggtatggccttgatatgaacaggggatctcagttcgtgtacggggacacagct
gtcactcagatgacattcctgcgcctcctgtccaaggaagcttcccagaacatcacctac
ctttgtagaaacagtgttgggtacatggatgaccagacaaagaacctgaaaaaagctgtg
attctgaaaggggccaatgacctggagatcaaggcagagggaaacagccgcttcagatac
actgttctgcacgacagctgctctaaacgtaatgggaatgtgggcaagactgtttttgag
tacagaacgcagaacgtggcacgcttacccatcatcgatattgcaccggtggacattggc
agcaccgaccaggaatttggaattgaaattgggccagtttgctttgtgtaa
DBGET
integrated database retrieval system
