Saccharomonospora viridis: Svir_20210
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Entry
Svir_20210 CDS
T00980
Name
(GenBank) DNA polymerase LigD-like ligase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
svi
Saccharomonospora viridis
Pathway
svi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
svi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Svir_20210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svi03400
]
Svir_20210
Enzymes [BR:
svi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Svir_20210
DNA repair and recombination proteins [BR:
svi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Svir_20210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ACU97039
UniProt:
C7MVT9
LinkDB
All DBs
Position
2155366..2156496
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AA seq
376 aa
AA seq
DB search
MISRGLFRGILCRRLGIGTVVAVGTVALESPAVVLEGLLYLGDSAALETIHAEYENMAPP
TPLPPMLAVSGDVPEGDQWVYDWKWDGVRAIVGIEGGEVRVHSRALRDITSRYPELQELA
AATRARLLLDGEIVALDEQGRPDFDRLQSRMQVGLPTPRMLRESPLYYYVLDLLVADGEN
LCGSSYRHRRDRLAELGLPAPPTIRPPDPHARISGSGLLDIAAEHGFEGIMAKRLDSPYR
PGVRSTDWINTPLRIRQEVVIGGWVPGRSRHAGTLGTLLLGAYDPSGALSYIGHVETGRP
DPSSEALLGKLEALTRPSSPFATPVPRRRARHARWVEPELVGEVEHRRWTNDRTLWRPSW
QGLRTDREPAEVTLPV
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgatctcgcgtggtctctttcggggcatactgtgccgtcgcctcggcatcggcaccgtc
gtcgctgtcggcaccgtcgccctggagagcccggccgtcgtcctcgaaggactcctctat
ctgggtgactcagctgcgctggagacgatccacgccgaatatgagaacatggccccaccc
acgccgctgccaccgatgctcgccgtctccggtgacgtacccgaaggcgatcagtgggtc
tatgactggaaatgggacggcgtgcgggcgatcgtggggatcgagggtggcgaggtgcgc
gtgcattcccgcgctctgcgagacatcaccagtcgctatcccgaattgcaggaactcgcc
gcggccacccgtgccaggctgttgctcgacggggagatcgtcgcactcgacgaacagggc
aggcccgacttcgaccgactccaatcccgcatgcaggtcggtctacccaccccacgcatg
ctgcgcgagagcccgctgtactactacgtcctcgacctactcgtcgcggacggcgagaac
ctctgtggatcttcctaccgccaccgccgggaccgactcgccgagctcgggctgcccgcc
cctcccaccatccgcccgcccgatccccacgcacggatctccggtagcggactgttggac
atcgcggccgagcacgggttcgaaggcatcatggcgaagcgtctcgactccccttatcgg
cccggtgttcgatcgacggactggatcaacacgccactgcgcatccggcaggaagtggtg
atcggaggctgggtgcccggaagaagccgacacgccggcacgctgggcaccctgctcctc
ggcgcctacgacccctccggcgcgttgagctacatcggacatgtcgagacaggacgtccc
gacccgagttcggaggccctgttgggcaagcttgaagcgctcaccaggccgtcgagtccg
ttcgccacccccgtcccccgccgtcgggcacgccatgcccgatgggtggagcccgaactc
gtgggcgaggtggagcaccggcggtggacgaacgaccgcacgctctggcgtccctcctgg
caaggcttacgcaccgatcgcgagccggccgaggtcacactgccggtttga
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