Saccharomonospora viridis: Svir_34920
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Entry
Svir_34920 CDS
T00980
Name
(GenBank) DNA ligase D/DNA polymerase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
svi
Saccharomonospora viridis
Pathway
svi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
svi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Svir_34920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svi03400
]
Svir_34920
Enzymes [BR:
svi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Svir_34920
DNA repair and recombination proteins [BR:
svi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Svir_34920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Recombinase
Motif
Other DBs
NCBI-ProteinID:
ACU98454
UniProt:
C7MQ31
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All DBs
Position
3792932..3794365
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AA seq
477 aa
AA seq
DB search
MAPRLEQYRNKRRKGHTPEPIPSVTLASTEGHGDTFVVHEHHARNLHWDVRLERDGRLIS
FAVPKGLPTEPGTVRLAVRTEDHPLEYSTFSGEIPKGEYGGGHMSIWDRGTYETLKWGES
KVSIVLHGERVHGKYVFFRTRESDWSVVRSDPPDDPEWTPIPSLLKPMLAVTGSLPDPEE
DSDWAYEFKWDGVRALARVEGGRVTLFSRRGDDITGIYPELRALGEDLGSTQAWLDGEIV
AFRDGRPHFATLQGRINAGAQKARRLSQRSPVTYLVFDLLHLDGHSCMGLPYWQRRNLLE
QLDITGEHWRTPPSFPGAGRAVTEAAAEQRLEGVVAKRLDSPYRPGERSVDWRKITELRT
LEVVIGGWRQGRGRRSDTFGSLLLGIPNDGRLQYIGQVGTGFDEDALHALTSRLHRLERR
TSPFSEALPKDRTSGAHWVSPRLVGEVAFKSWTDDGRLRAPTWRGLRPDRDPEELAR
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcgactcgagcagtaccggaacaagcggaggaaaggacacacccccgaaccg
atacccagcgtaactctcgcgtcgacggagggccacggcgacacgttcgtcgtgcacgag
catcatgcccgcaatctgcactgggacgtgcgcctcgagcgcgacggcaggctgatctcg
ttcgcggtaccgaagggacttcccactgaaccgggcacagtgcgactcgccgtgcgcacc
gaggaccatccgctggagtactcgacgttctccggagagatcccgaaaggcgagtacggc
ggcggacacatgtcgatctgggaccgaggtacctatgagactctcaagtggggcgagagc
aaggtctcgatcgtcctgcacggtgaacgggtgcacggcaagtacgtgttcttccgcacc
cgggaaagtgattggagcgtcgtacgttccgatccaccagacgatccagagtggacccca
attccctccctcctcaaacccatgctcgccgtgacgggctccctgcccgaccccgaggag
gactccgactgggcatacgagttcaaatgggacggtgtacgcgccctcgcccgggtcgaa
ggggggagagtcacgctgttctcccggcgaggcgacgacatcaccgggatctatccggaa
ttgcgtgcgctcggcgaggatttgggaagcacccaggcttggctggacggtgagatcgtg
gcgttccgagacggcagaccacacttcgccaccctgcaaggccgcatcaacgcgggagcg
cagaaggcccggaggttgtcccagcgctccccggtcacgtatctcgtgttcgacctgctg
cacctcgacggccattcctgcatgggactgccctactggcagcggaggaacctgctggag
cagctcgacatcacgggtgaacattggcgaacccctcccagcttccccggggccggtcga
gcggtcacggaggccgctgccgaacaacgactggaaggggtcgtcgccaagcgcctcgac
tccccctaccgccccggggaacgcagcgtcgactggcgcaagatcaccgaactgcggacg
ttggaggtggtcatcggcggctggcggcaaggccggggaagacgctccgacaccttcggc
tcgctcctgctgggcatccctaacgacggtcggcttcagtacatcggccaggtcggaacc
ggattcgacgaggacgccctgcacgccctcacctccagactgcaccggctggaacgccgg
acctcgccgttctccgaagccttaccgaaagaccggacgagcggagctcactgggtcagt
ccgcgactcgtgggcgaggtcgcgttcaagtcgtggaccgacgacggccgactgcgcgca
ccgacgtggcgggggctgcgccccgaccgcgatccggaggagttggcgcgatga
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