Saccharomonospora viridis: Svir_34930
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Entry
Svir_34930 CDS
T00980
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
svi
Saccharomonospora viridis
Pathway
svi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
svi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Svir_34930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svi03400
]
Svir_34930
Enzymes [BR:
svi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Svir_34930
DNA repair and recombination proteins [BR:
svi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Svir_34930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
ACU98455
UniProt:
C7MQ32
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All DBs
Position
3794362..3795273
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AA seq
303 aa
AA seq
DB search
MTTMTQPVDIEGRRLELSNLDKILYPEHGFTKGELIDYYARVAPVLLPHVRDRPLTLKRY
PDGVEGKSFFEKNVSTHAPDWVRTVPIETPESSHSRKSADFALVQDLSTLVWAANLASIE
LHIPQWTVGPRGERRNPDLLVFDLDPGAPATIVDCCEVALWLRDELTDDGLTAYPKTSGS
KGLQLYAPVQTRSDDRTNDYAKRVAEKLERRHPRRVVSRMAKKLRVGKVLIDWSQNNPKK
TTVAPYSLRARSAPTVSTPVTWSEVEACENPAELGFVADEVLDRVDEHGDLFESLLTRAR
PSL
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccatgacacaaccagtcgacatcgagggacgccgactcgaattatccaatttg
gacaaaattctctacccggaacacggattcaccaagggcgagctcatcgactactacgca
cgggtggctccggtgctgttaccccacgtgcgggaccgtccgctcaccctgaaacgctat
cccgacggggtcgagggtaagtcgttcttcgagaagaacgtctccacccacgcacccgac
tgggtacgcaccgtgcccatcgagacaccggagagctcgcacagccgaaaaagcgccgac
ttcgcgctcgttcaggacctgtcgaccttggtgtgggccgcgaacctcgcgagcatcgaa
ttgcatatcccgcaatggaccgtcgggccacgaggagaaagacgcaatccggacttgctc
gtgttcgacctcgatcccggagcccccgccacgatcgtcgattgttgcgaggtggcgctg
tggctacgcgacgaactcaccgacgacggactgaccgcgtatccgaaaaccagcggctcg
aaaggattgcaactctacgctcccgtacagacacgttccgacgaccgaacgaacgactac
gccaagcgagtggccgagaagctggagcgtcgacatccgcgccgggtcgtatcccgcatg
gcgaagaagctgcgcgtcggcaaagtgctcatagactggagccagaacaaccccaagaaa
accaccgtcgcgccctactcattgcgcgcgagatcggcgcccaccgtgtccacaccggta
acctggtcggaggtcgaagcctgcgagaacccggcggagctcgggttcgtggccgacgag
gtgctggaccgtgtcgacgagcacggcgacctgttcgaatcccttttgacgcgagccagg
ccgtccctttga
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