Shewanella violacea: SVI_3167
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Entry
SVI_3167 CDS
T01206
Symbol
rpoS
Name
(GenBank) RNA polymerase sigma-38 factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
svo
Shewanella violacea
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svo03021
]
SVI_3167 (rpoS)
Transcription machinery [BR:
svo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SVI_3167 (rpoS)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
BAJ03138
UniProt:
D4ZAU3
LinkDB
All DBs
Position
complement(3590974..3591960)
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AA seq
328 aa
AA seq
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MGDHFMGRRISTAIAEPLVDLSKNESKTQTKKGKKLQEAELEQQVQDDLQKNLDATQLYL
GEIGFSPLLSAEEEVYFSRKSLKGCGKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEE
GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTA
RELAHKLDHEPTAEEIAAKLDLPSSDVSRMLKLNERITSVDTPLGGDNDKALLDVLAADD
SVGPDYKVQDEDMSKSVVKWLDELNTKQREVLARRFGLLGYEPSTLENVGKEIGLTRERV
RQIQVEALKRLKDLLGAQGLSVEAIFKS
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
ttgggagatcattttatgggtcgtagaatcagtaccgcaatagcggagccgttggtggac
ttgtcaaaaaacgagtctaaaacacaaacaaaaaaaggaaaaaagttacaagaagcagag
cttgaacagcaggttcaggatgatctacagaaaaatctggatgcaactcagttgtattta
ggcgagattggtttttcccctttgctgagcgcagaagaggaagtgtatttttctcgtaaa
tcgttaaaaggctgtggtaagtcacgtaaccgcatgattgaaagcaatcttagactcgtt
gttaagatagctcgtcgctataacaaccgtggactcgcattgcttgatcttattgaagag
ggcaatttaggcttgatccgagcggtcgagaaatttgatcctgaaagaggcttcagattt
tctacctatgcgacttggtggattagacaaaccatcgaacgcgccatcatgaatcaaacc
agaactattcgtttgcctatccatgtagttaaagaactcaatgtatatttgcgtacagca
agagaactagcacacaagttagatcatgaacctactgcggaagagatcgcagctaaattg
gatctgcctagctctgatgttagtcgcatgttgaaacttaatgaaaggatcacttcggtt
gatacgccattaggtggagacaatgacaaagccttgctcgatgtacttgccgctgatgac
agtgtcggtcctgattacaaagttcaagacgaagatatgtcaaagtctgtggttaagtgg
ctcgatgaactcaataccaaacaaagagaagtgctagcacgccgttttggtttgttgggg
tatgagccatctaccctagagaatgtgggtaaagagatagggctaacgcgggagcgtgta
cgtcagattcaagttgaagctttaaaacgtcttaaagacttactcggtgcccagggctta
tcggtagaggccatctttaagagttag
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