Shewanella violacea: SVI_4320
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Entry
SVI_4320 CDS
T01206
Name
(GenBank) collagenase family
KO
K01387
microbial collagenase [EC:
3.4.24.3
]
Organism
svo
Shewanella violacea
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
svo01002
]
SVI_4320
09183 Protein families: signaling and cellular processes
02042 Bacterial toxins [BR:
svo02042
]
SVI_4320
Enzymes [BR:
svo01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.3 microbial collagenase
SVI_4320
Peptidases and inhibitors [BR:
svo01002
]
Metallo peptidases
Family M9
SVI_4320
Bacterial toxins [BR:
svo02042
]
Toxins that damage the extracellular matrix
Hyaluronidases/Collagenases
SVI_4320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M9
PPC
DUF995
Motif
Other DBs
NCBI-ProteinID:
BAJ04291
UniProt:
D4ZFC7
LinkDB
All DBs
Position
complement(4930418..4933159)
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AA seq
913 aa
AA seq
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MVIHDVLSRLYLKIINNPILKGTRMINIKNTSKRVTAYGSALVAVSLFSGAGVAATVNTP
PTAESINTLSKPSSHIHQAAMPMSTQAQMAPGDSVLRYQYSCSSAISIRSESYISPENLQ
AVCDELVTEEARYHLLMKTNQQPLAGDYSQTVEINAFKDYASYQYNAAQIFGIDTNNGGM
YLEGDPSIPGNQARYVTYITDDANSWWIMNLSHEFNHYLDGRYNMAGNFETYMSSSNNVV
FWLEGSAEYIAWVDWPYDYIGELAASAALSLSDVVNTTYEHDTGRIYQWGYLGVAFIFER
HPEALDSILAAFRSGDYASYNSFIQNFAYQNSSEWYEWLTCTASYHDSPNKECWDHTPTD
GGGGGDGGIPADASCNAMGPYSGRTSTATSITIENLTSQHLKIRWLQADGSLYSTIYDSD
FEPGERWSHSASVGDKWVVTDNSGSCKKLFTAELDGAYSIGDQQAGITDLVKGVAASIPA
ANAGDEYRFRLSVPAGATDVSFSVSGNNGDADLYVKKGSQPTSKAYDCKSDSSGSVETCI
AGNGEGDFYGLVSAYSAFSQAQITADYQLANTGGLTPDASCALEGQAYSRNGTQTQFTIN
NNSDTNLKIQWLQADGSRYANVYNDSFAPGDSWSRSSYTQDRWVITDQSGQCMKVITVSA
NASFDMVGDGGGDGGGGGNTLQACAGGIQAYPTSYPNSWYYTRLCTSGTGIPIVSANVAS
AASIERTAYLLDGVMQTVDSRVVPQMVANGFRHAVMGRYPYELTTQLPEYSHLDSAYWDE
RARGLGGMPSVPVGSSAEENAMCYSDDRYLGEDITIHEYAHSLHLLGLDYVFPGFSSQLQ
SAYSNANYYNLWGAGHYAMTDYKEYWAEGVQSFFNSNMGGGPNTRSALQAQDPTLYGIVY
GIFGNSPFYRTCP
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
ttggttatccatgatgttttgagtcgtttgtatttaaagataataaataacccaatttta
aagggtactagaatgataaatataaaaaataccagcaagcgagtaacggcttatggttct
gcgctagtcgcggtctcactttttagcggtgctggagttgcagctactgtgaatacaccg
ccaacagcggaaagtatcaacaccttaagtaaacctagttcacatattcatcaggctgcc
atgcccatgtcgactcaggcacaaatggcaccgggagactctgtattacgctatcaatat
agctgtagtagtgcgatatcgattcgctccgagtcctacataagtcctgaaaatctacag
gctgtgtgtgatgaactcgtcactgaagaggctaggtaccacctcttgatgaaaaccaat
cagcagcccctagcgggggattatagtcaaactgttgagattaatgcatttaaagactat
gcctcctatcaatacaatgctgcacagatatttggtatcgacaccaataacggtggtatg
tatctggagggtgatccttcaatacctggtaatcaggccagatatgtgacctatattacc
gatgatgctaatagctggtggatcatgaatctatcccatgagtttaatcattatctcgat
ggtcgatacaatatggccggaaatttcgaaacctatatgtcgagctctaataatgtggtt
ttttggttagagggctcggctgaatatatagcttgggtcgactggccctatgattatatt
ggtgaattggcagcatcggcggcattgagtctatccgatgtggtcaatactacttatgaa
catgatactggtcgaatctatcaatggggatatttgggcgtagccttcatattcgagcgt
catcctgaagcgttagatagcatactagccgcatttagaagtggagattatgcatcctac
aacagcttcattcagaattttgcttaccaaaatagcagcgagtggtacgagtggttaact
tgtacagccagttatcatgatagtccgaataaggaatgttgggatcatacacctacagat
ggtggcggaggaggagatggcggcatccccgcagatgcctcatgcaatgccatgggcccc
tatagcggaagaacctcgacagcaacgtctatcactatcgaaaacttaacctctcagcac
ctgaaaattcgttggttacaagcagatggtagtctctactcaactatttatgatagtgat
tttgaacctggtgagcgttggagtcacagcgcctcggttggtgataaatgggtggtaacc
gataactcaggcagttgtaagaagctgttcactgcggaacttgatggtgcttacagcata
ggtgatcaacaagctggtataacagatctggttaagggggtggcggcatcaatacccgct
gcgaatgccggcgatgaataccgttttcgtttgagtgtgcctgcaggcgcgacggatgtt
agttttagcgtcagtggtaataacggtgatgccgacctctatgtgaaaaaaggcagccag
ccgacatcaaaggcctacgattgtaagtctgatagctcaggcagtgttgaaacttgtatc
gcaggtaatggtgagggtgatttctatggactggtgtctgcttattcagccttctctcaa
gcccagatcaccgctgattatcaacttgctaatacaggcggtttaacaccagatgcatcc
tgtgccttagagggacaggcttacagcagaaatggtactcagactcaatttaccatcaat
aataacagtgacactaatctgaaaatacagtggctacaggccgacggtagccgatatgcc
aatgtctataatgatagttttgcccccggtgatagttggagtcgcagcagctatacccaa
gataggtgggtgatcacagatcagtctggtcaatgtatgaaagttatcactgttagcgct
aatgccagctttgatatggttggagatggcggcggtgatggtggcggtggtgggaatacg
cttcaagcttgtgccggtggtattcaggcatacccaactagttatccaaacagctggtat
tacactaggttatgtacctcaggtacaggtatcccaattgtgtcggccaatgttgcttcg
gctgcatctatcgagcgtacggcttacttgttagatggtgtaatgcagaccgtagacagt
cgagtggttccacagatggttgccaatggatttcgtcatgctgtgatgggcagatatccc
tatgagctaacgactcagttacccgaatatagccatctggattctgcctattgggatgaa
cgtgctcgaggtttgggaggcatgccttctgtgcctgtaggctcgagcgccgaagagaat
gctatgtgctattcagatgatcgctatcttggcgaagacataactattcatgaatacgct
cactccttgcacctcttagggttagattatgtattccctggttttagtagccaattgcag
tcggcttactccaatgctaactattataatctttggggcgcgggtcattatgccatgaca
gattataaggaatattgggccgagggagtgcaaagcttcttcaattcgaatatgggaggt
gggccgaatacccgcagtgcactacaagcacaagatcctactctatacggcatcgtctat
gggattttcggtaatagtccgttttatcgaacctgtccttag
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