Setaria viridis (green foxtail): 117853237
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Entry
117853237 CDS
T07951
Name
(RefSeq) pentatricopeptide repeat-containing protein At5g27270 isoform X1
Organism
svs
Setaria viridis (green foxtail)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PPR_2
PPR
PPR_3
PPR_1
PPR_long
TPR_19
TPR_14
MRP-S27
ANAPC3
RPM2
TPR_12
Coatomer_E
SRP_TPR_like
Motif
Other DBs
NCBI-GeneID:
117853237
NCBI-ProteinID:
XP_034591509
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Position
4:696896..700987
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AA seq
1021 aa
AA seq
DB search
MAAPMAAAAANVSITCCCSSSYEDDDSATSSWSLSSQRRRPYRRLLHEEAQRLRRARRSQ
GPGADTPRWVRRTADQMARYVEDDRAGHVYGRHVVAAVRAVRATASRPSADMRLAMASFV
TKLTFREMCVVLREQRGWRQARDFFAWMKLQLCYEPSVVAYTILLRLYGRVGKIKLAEET
FLEMLEVGCEPDAVACGTLLCAYARWGQHKDMMLFYSAARRRDIVPPISVYNYMISSLQK
QKLHGKVIQVWKQMLEAGVAPNQFTYTVIISSFVKEDLLEEAMDVFGEMKRRKFIPEEAT
YSLLISLSSKHGRGEQALQLFEEMRVQGIVPSNYTRASLLSLYYKNEDYSKALSLFSEME
DNKIVPDEVIYGILIRIYGKLGLYEDAHRTFAEIGKADLLSDEQTYVAMAQVHMNVGHYD
RALEVLESMKARNVKPSHFSYSALLRCYVAKEDMAAAEDSFRALSKYGLPDVFCCNDLLR
LYIRLGHLEKARTLVLKMREDNFQLDDDLHMTVMELYCKIGMVDDAEKLFKEIQRNGKPM
KIPTMVSLIEMYARNRTRAIQKYQSLSKALDKTSSSSAGMALKFLLDMPGGLSSVSQLIS
KLAREGSTDEAKFIYDQLIEMGIKPNDSAVATLIVQYGQGEQLEQAQELFESASASFPEG
AHIYNAMVDAFCKCGKTEDAYHLFMEMADQGNNRDAVTVSILVNHLTKNGKFQEVENIIH
GCFRDEVQLDTVLYNTFIKSMLESGKLHSAVGIYDRMISSGISRSMQTFNIMISVYGKGG
KLDKAIDMFAAAQELGLPIDEKIYTNMLSLYGKAGRHQEASLMFKRMKEDGIRPGKISFN
SMINAYATSGLHMEAKSIFQEMQGSGHAPNSLSYLALIRAYTEGKLYAEAEETIQMMLNS
NITPSCPHFSHLIFAFLKEGKISGAQRIFNRMVEEIGVAPDLACCRTMMRVYLEQGLVDD
AISLFEMTRESLKPDSFILSAAFHLYEHAGRESEAGHVLDAISVNGTAFLRNLKVGSKLR
C
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggcagctccaatggcggccgcagcggccaacgtatccatcacctgctgctgctcctcc
tcttatgaagacgacgatagcgccacctcctcctggtcactctcctcccagcgccgccgg
ccttaccggcgcctcctccacgaggaggcgcagcggctccgccgcgcgcgccggagccag
ggcccgggcgccgacacgccgcggtgggtgcgccgcaccgcagaccagatggcccggtac
gtcgaggacgaccgcgctggccacgtctacggccgccacgtcgtcgccgccgtccgcgcg
gttcgcgccacggcgtcgcgcccctccgcggacatgcgcctggccatggcgtcgttcgtc
accaagctcaccttccgcgagatgtgcgtcgtcctccgcgagcagcgcggctggcgccag
gcgcgcgacttcttcgcatggatgaagctccagctgtgctatgaaccaagcgttgtagcc
tacaccatccttctgaggttgtatggccgggttgggaagatcaagcttgctgaagagaca
tttcttgagatgctcgaggttggctgtgagcctgatgcagtagcatgtggaaccctcttg
tgcgcatacgccaggtgggggcagcacaaggacatgatgctcttctactccgcggcgcgc
aggcgcgacatagttcccccaatttcggtctacaattacatgatctcgtctttgcagaag
cagaagctgcacggcaaagttatccaggtgtggaagcagatgctggaagctggcgtcgcg
ccgaatcagttcacatatactgtcatcatcagctcctttgtcaaggaagatctcttggag
gaggccatggatgtgttcggtgagatgaagcggcgcaaatttattccggaggaggcaact
tacagccttttgatcagcttgagctccaaacatggtagaggagaacaggcgttgcagctc
tttgaagagatgagggttcagggaattgtccccagtaactacacacgtgcatctctcttg
tcactgtattataagaatgaggactactcaaaggcactttccctattttcagagatggaa
gataacaagattgttcctgatgaagtcatctatggaattcttatcaggatttacggtaag
cttgggctttatgaggacgcacatcgcacatttgcggagattgggaaggcggatcttctg
agcgacgagcagacttatgtggcaatggctcaagttcacatgaatgttggacattacgat
agagcactggaggtgttagaatctatgaaggcgaggaatgtgaagccttcgcacttttct
tacagtgctcttctccgatgctatgttgcaaaggaagacatggctgctgcagaagatagc
ttcagagctctctccaaatatggcctccctgatgtgttttgctgcaatgacctgctcagg
ttgtatatcagactgggccatctagaaaaggccaggacactagtactgaagatgagggaa
gataatttccagcttgatgatgaccttcatatgacagtgatggaactttattgcaaaatc
ggtatggttgacgatgcagagaaattattcaaagagattcagagaaatggaaaacccatg
aaaattccaacaatggtttcacttatagagatgtatgctagaaacagaaccagggctatt
cagaaatatcagagcctgtcaaaggcgctagacaaaactagtagttcatcagctggcatg
gcattgaaattcttgttggacatgcctgggggcttgtccagtgtgtcccaattgataagc
aaattggccagggaagggagtacagatgaggcaaaattcatttatgaccagctgattgaa
atggggatcaagcctaatgattctgcagttgctactttgattgtccaatatggccagggg
gagcagttagagcaagcacaagaactgttcgagtcggcatcagcatcgtttccagaagga
gcacatatctacaatgccatggttgatgcattctgtaaatgcggcaaaactgaggatgca
taccatcttttcatggaaatggctgatcaaggcaataatagagatgcagtgacagttagc
attcttgtcaatcacctgactaaaaatgggaaatttcaagaggttgaaaacatcatacat
ggctgtttccgcgatgaagttcagcttgacactgtcttgtacaatactttcatcaagtcg
atgcttgagtcaggtaaactgcattcagccgttggcatatatgatcgcatgatatcctct
ggcatttcacggtccatgcagacattcaatataatgataagtgtttatggcaaaggagga
aagctggacaaggctattgacatgtttgctgctgcacaggagctaggcttgccaatcgat
gaaaagatatacacaaacatgcttagcttatatggaaaagctggtaggcatcaggaggca
tctttaatgttcaaaagaatgaaggaagatggtatcaggcctggaaagatcagcttcaat
tccatgatcaacgcctatgccacttctggactgcacatggaggcaaagagtatattccag
gagatgcagggcagcggtcatgctcccaactcgctttcctatcttgcactgatcagagca
tacacagagggcaaactctatgcagaagctgaggaaaccattcagatgatgctgaacagc
aacataaccccatcctgccctcacttcagccacctgatttttgcctttctgaaggaagga
aagatcagtggtgcccagaggatcttcaaccgaatggtggaggagataggtgtggctccc
gatctggcctgctgcaggaccatgatgagagtgtacctggagcaaggtcttgtggatgat
gcgatctcgctctttgagatgactcgtgaatcgctgaaacctgacagcttcatcttgagc
gctgcatttcatctgtatgagcatgcaggcagggagtctgaagctgggcatgtcctggat
gccatcagtgtaaatggtaccgctttcctgagaaacctgaaggttggatcaaagcttaga
tgttag
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