Shewanella woodyi: Swoo_3928
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Entry
Swoo_3928 CDS
T00676
Name
(GenBank) protein of unknown function DUF181
KO
K09136
ribosomal protein S12 methylthiotransferase accessory factor
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
swd03009
]
Swoo_3928
Ribosome biogenesis [BR:
swd03009
]
Prokaryotic type
ribosomal protein modification factors
Swoo_3928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YcaO_C
YcaO
OsmC
GNA1162-like
Motif
Other DBs
NCBI-ProteinID:
ACA88186
UniProt:
B1KFL1
LinkDB
All DBs
Position
complement(4787840..4790026)
Genome browser
AA seq
728 aa
AA seq
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MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFIKVYCK
ARDIPTENIRLSQNNIVDPEDRYNQIFQIQVELPEDISEKDRQGILRSIERCTVKKVVQT
GPEFKIETVENLDADANAMLMGQGDSDANTYILGKDLPLEQTISNMTGILADLGMKIEIS
SWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNCNFFYNDQFFGEE
IANSEFVHYPNEKWFELTDDDSLPAGMLDEYCLEIYNPDGELAGSNLIDTNSGNIDRGIC
TIPYTRHSDGETVYFPSNLIENLFLSNGMSAGNNLQEAQVQCLSEIFERAVKRQIIEQEI
VLPDVPQTVLEKYPSILAGIKGLEEQGFPIVVKDASLGGQFPVMCVTLMNPKTGGVFASF
GAHPSLEVALERSLTELLQGRSFEGLNDVPKPTFNSMAVTEPENFVEHFIDSTGVISWRF
FSSNAEFEFCEWDFSGTNQEEADSLFGILADLGKEVYTAEFNDLGASACRMLVPDFSEVY
PVDDLIWDNTNKSLEYREDILNLHSLSDDELVDLVNRLEESQQDNYTDIRTMIGIVFDEN
TVWGQLTIIELKILIYLALGAHEEAIELVGDFLQFNDNTVERGLFYQAVNAVLEVTLDET
LELEHFINNFNRMFGIDVMQNVVGSVNGDVRFYGLTKTSMALEGIEPHLRLIESYKKLHS
ARAKSAAE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaaagttaattttctcgacaatctgagattggaagctaagttcgatgacttt
actgtcacagcagatcagcctattcgctacaagggtgacggctcggcgccgagtcctttc
gattatttcttagcatcgtctgccttgtgtgccgcctattttataaaggtgtactgcaag
gcgcgtgatattccgactgaaaacattagattgtcacagaataatattgtcgatcctgaa
gatcgctataaccagattttccaaattcaggttgagttacctgaggatatctcagagaaa
gatcgccaggggattttgcgttccattgagcgttgtaccgttaagaaagtggtgcaaaca
ggccctgaatttaagattgagactgttgaaaatttagatgccgatgccaatgcgatgctc
atgggacaaggtgatagcgacgcgaacacctatatcttaggtaaagatttgccacttgag
cagaccatctccaatatgaccggcatcttggcggatcttggaatgaagatagagatctcc
tcatggcgtaatatcgtacccaacgtatggtcactgcatattcgtgatgctgcatcgcct
atgtgttttaccaatggtaaaggggcgaccaaagagagcgcactttgctctgcgttaggt
gagtttatcgagcgtcttaactgcaactttttctataatgatcagttctttggtgaagag
attgccaatagcgaatttgttcattacccaaatgagaagtggtttgagttaactgacgat
gattcacttcctgcgggtatgttagatgaatattgtttagagatttataacccagatggc
gagcttgcaggctctaacctgattgataccaactcgggcaatatcgaccgtgggatctgt
accattccctatacgcgtcactcagatggtgagacagtgtacttcccatcaaacctaata
gagaacctgtttttaagtaatggcatgagcgcgggtaataacctgcaggaagcacaagtt
cagtgtctgtctgagatctttgagcgcgccgttaagcgccagatcatcgagcaagagata
gtcttgccggacgtgccacaaacagtgttagagaagtacccaagtatcttggctggaatt
aagggactagaggagcaaggcttccctattgtcgttaaagatgcctcactaggtggtcag
tttcctgtgatgtgtgtgaccttaatgaatccaaagactggcggtgtatttgcctcattt
ggtgctcatccaagtcttgaggtcgcactagagcgcagcttaactgagttgctgcaaggc
cgaagcttcgaagggctaaatgatgtacctaagcctacttttaacagcatggccgtgact
gagcctgaaaactttgttgagcactttatcgattcaaccggcgtgatctcatggcgcttc
tttagcagtaatgctgagtttgagttctgcgagtgggatttctcaggcactaaccaagag
gaagctgatagcctgtttggtattcttgctgacttaggtaaagaggtatacaccgctgag
tttaacgacttaggtgcgtcggcgtgccgtatgctagtgcctgatttttcagaggtctac
ccagtcgatgatctgatttgggataacaccaataagtcgcttgaataccgtgaagatatc
ttaaatctacattccctgtctgatgatgagctggtggatctggtcaatcgtttagaggag
agtcagcaggataactacaccgatattcgtaccatgataggtatcgtgttcgatgagaat
accgtttgggggcagctcaccattatcgagcttaaaattcttatctatctagcacttggt
gctcacgaggaagcgatagagttagttggtgacttcctgcagtttaacgataatacggtt
gagcgtggtctgttctatcaagcggtgaatgctgtattggaagtgaccttagatgaaact
cttgagcttgagcacttcatcaataactttaaccgtatgtttggtatcgatgtgatgcaa
aatgtggttggctcggttaatggtgatgttcgtttttatggcttgaccaagaccagtatg
gccttagagggaattgagccacatctgagactgattgaaagctacaagaaactgcatagc
gcacgagcaaagagcgccgcagaataa
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