Rhizorhabdus wittichii RW1: Swit_5282
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Entry
Swit_5282 CDS
T00538
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
swi
Rhizorhabdus wittichii RW1
Pathway
swi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
swi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Swit_5282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swi03400
]
Swit_5282
Enzymes [BR:
swi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Swit_5282
DNA repair and recombination proteins [BR:
swi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Swit_5282
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ABQ71390
UniProt:
A0A9J9LGR0
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All DBs
Position
pSWIT01:181186..183162
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AA seq
658 aa
AA seq
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MRLPRSATRGASVGEPSPGRAGTSPALAHFGLHEEQRPSIMARMTAAPRKAASTSRAPPF
RAVQLATLVDTVPTGNRWLHEMKYDGYRVLLSVGGGEAVAYTRSGLDWSEKFSGLVADAL
KLKVSSALIDGEAVVLDADGRSSFQALQNALKGAPASIDYFAFDLLELDGEDLTQLPLTE
RKAKLAKILPKGKSRLRYSDHIAGNGEKLLDQFCAAGLEGVISKRADGRYVGSRSGGWLK
TKCIKRQEFVVVGWTPSDKSRLFRSLILGVHEDGVLRYAGKVGTGFDTQEIIDLMAVMAP
LEQEAPTVKAPRAEVRGAHWLRPTLVAEIAFTEMTNEGTLRHPSFLGLREDKKPEAVVVE
TEAPVEAVTAETSSIKITNRDRVIFPEGKLTKGQLADYYTQVAPIMLPWIGSRPISLVRC
PQGRAKKCFFQKHDAGSFGDAVRHVAIREKDGHDEPYLYVDTADGLLTCVQMGTIEFHGW
GARIEDVERADRLVFDLDPDEGLDFENVRSAAFHFREILQSIGLETFPMVTGGKGVHVIA
PLVPQAEWPEVKDFAHRLAQAVAQSDPEHFTAALPKAQRKGRIFVDYLRNQRGATAVMPY
GVRAREGAPVAVPITWKEMETIDKPSHWTIRDGAELVKRAGSKALSGWGRADQTLPDL
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgcggttgccgcgatcggcgacacgtggggcgtcggtcggcgagccgagtccgggacgc
gctggaacgagtccggcgctcgcgcactttggactccatgaagaacaacggccatccatc
atggcgcgcatgaccgcagcgccaaggaaagcggcttccaccagccgcgcgccgcccttc
cgcgcagtgcaactcgcaacgctggtcgacacggttcctaccggcaaccgctggctgcac
gagatgaagtatgacggttaccgcgtgctgctgagcgtcggcgggggcgaggccgttgcc
tatacccgctcgggtctcgactggtcggagaagtttagcggactggttgccgacgccctg
aagctgaaggtttcctccgcgctcatcgacggcgaggcggtcgtgctcgatgccgacggc
cgctcgagtttccaggccctgcaaaacgcgctcaaaggggcgccggcttcgatcgattat
ttcgcgttcgacctgctggagctcgacggcgaggatctaacccagttgccactcacggag
cgcaaggcgaagctcgcgaagatcctgcccaagggcaagtcgcggttgcgctattcggat
cacattgccggcaatggcgagaagttgctcgaccagttctgcgcggcgggcctcgaaggg
gtgatctcgaagcgggccgacggccgctatgtcggctcgcgatcgggcggctggctgaag
accaaatgcatcaagcggcaggagttcgtcgtggtcggctggaccccttcggacaagtcg
cggttattccgatcgctgatcctgggtgtccatgaggacggcgtcctgcgctatgccggc
aaggtcggcaccggcttcgatacccaggagatcatcgacctgatggcggtgatggcgccg
ctcgagcaggaggcgccgaccgtcaaggcgccgcgcgcagaggtgcgcggggcgcactgg
ctgcggccaacgctggtcgcagaaattgcatttaccgaaatgacaaacgaagggaccctc
cggcatccgtcctttctgggcctgcgagaagacaagaagcccgaggctgtggtcgtcgag
accgaggcgccggttgaggcggtgacggccgagacctcgtcgatcaagatcaccaaccgc
gaccgtgtcatttttcccgaagggaagcttaccaagggtcagctggccgattattatacg
caggtcgctccgatcatgctgccctggatcggttcgcggccgatcagcctcgttcgctgc
ccgcaaggccgagccaagaaatgcttcttccagaagcatgacgcgggcagttttggcgac
gctgtacggcatgtcgccattcgcgagaaggacgggcacgacgagccctatctctatgtc
gataccgcggacggcctgctcacatgcgtacagatgggcacgatcgagttccatggttgg
ggcgccaggatcgaggatgtcgagagggccgaccggctggtcttcgatcttgatcccgac
gagggcctggatttcgagaatgtgcgcagcgccgccttccactttcgcgagatcctgcag
tcgatcgggctcgagaccttcccgatggtgaccggcggcaagggcgtccatgtgatcgcg
ccgcttgttccgcaagcggagtggccggaggtgaaagactttgcgcatcggctggcccaa
gcggttgcccagagtgaccctgagcatttcacggccgccctgccgaaagcgcagcgcaag
ggccgcatctttgtcgactatcttcgcaaccagcgcggtgcgacggcggtcatgccctat
ggggtccgcgcgcgcgaaggcgcgccggtcgccgtacccatcacatggaaggaaatggag
acgatcgacaagccctcgcactggaccattcgcgatggcgccgaactggtgaagcgggcc
ggctccaaggcgctcagcggttggggccgcgccgaccagaccctgcctgacctgtga
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