Streptomyces xiamenensis: SXIM_04370
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Entry
SXIM_04370 CDS
T03904
Name
(GenBank) DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sxi
Streptomyces xiamenensis
Pathway
sxi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sxi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SXIM_04370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sxi03400
]
SXIM_04370
Enzymes [BR:
sxi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SXIM_04370
DNA repair and recombination proteins [BR:
sxi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SXIM_04370
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKG41821
UniProt:
A0A0F7CMV5
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Position
498586..499464
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AA seq
292 aa
AA seq
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MPVVAVEGRRLSLSRLEKVIYPDGTTKGEVLHYYAAHGSAILPHLRDRPLSLLRYPDGPD
GERFFTKHVPQGTPEWVKICEVPRSGGGTMRQVVLQDLASVVWAANLVVEFHTPQWRYEE
PGVADRLVFDLDPGEPATVAECCEVALWLRERLARDGLAAYPKTSGSKGLHLLSPLRPVD
SRRASEYAKAVAGEAAAALPGLAIATMAKRLRPGKVFIDHSQNAARKTTAAPYTLRARAI
PAVSTPVTWEEVAGCAEPEQLVFTLHDLPHRLAAHGDLMTPLLNPRAARPLP
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtcgtcgcggtggagggacgtcgtctgtcgctgtcccggctggaaaaggtgatc
tatccggacgggacgaccaagggcgaggtgctgcactactacgccgcccacggcagcgcg
atcctgccccatctgcgggatcggccgctgagtctgctgcgctatccggacggcccggac
ggcgagcgcttcttcaccaaacacgttccccagggcacccccgagtgggtgaagatctgc
gaggtgccgcgctcgggtggcggcaccatgcggcaggtcgtcctccaggacctggcgagc
gtggtgtgggcggcgaacctggtggtggagttccacaccccgcagtggcggtacgaggag
ccgggcgtcgccgaccggctggtcttcgatctggatccgggcgagccggccaccgtcgcc
gagtgctgcgaggtcgcgctgtggctgcgcgagcgcctggcccgggacggcctggccgcg
tacccgaagacctcgggctccaaggggctgcatctgctgagcccgctgcgcccggtggac
tcgcggcgtgcctcggagtacgccaaggcggtggccggtgaggccgccgccgcgctgccg
ggtctcgcgatcgccaccatggccaagcggctgcggccgggcaaggtgttcatcgaccac
agccagaacgcggcccgcaagacgacggccgccccctacacgctgcgcgcccgagccatc
ccggcggtctccacccccgtcacctgggaggaggtcgccgggtgcgcggagccggagcaa
ctcgtcttcaccctgcacgacctcccgcaccggctggccgcacacggcgacctgatgacc
ccgctgctcaacccccgtgccgcccgcccccttccctga
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