Streptomyces xiamenensis: SXIM_46520
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Entry
SXIM_46520 CDS
T03904
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sxi
Streptomyces xiamenensis
Brite
KEGG Orthology (KO) [BR:
sxi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sxi03016
]
SXIM_46520
Enzymes [BR:
sxi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SXIM_46520
Transfer RNA biogenesis [BR:
sxi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SXIM_46520
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AKG46036
UniProt:
A0A0F7CQ98
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All DBs
Position
complement(4995177..4996436)
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AA seq
419 aa
AA seq
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MTDAQQTADDAAPPTTEETGPAAVPLLAPREGVPEVTADDAALESVVAAFAAGSGPVAVD
AERASGYRYGQRAYLVQLRREGAGTVLIDPVACPDLSALGAALSGTEWVLHAATQDLPCL
RDIGMVPEQLFDTELAGRLAGFARVGLGVMVENVLGYSLEKGHSAVDWSSRPLPEPWLRY
AALDVELLVDLRDALEEELTKQGKLEWAHQEFAAIVAAPPAPPRKDPWRRTSGVHKVRRR
RQLAVVRELWTTRDHVAQRRDLSPGKVLADAAIVAAALAVPADVTALAALPGFGHRMGRR
QLQQWQAAVDRAKRLPESQLPQPGQPVTGPPPPRSWADKDPAAAARLAAARAAVTAHAEE
LRLPQENLLAPDTVRRLCWEPPAGAEPELVAQSLRSLGAREWQIEQTVPLLTQALAADA
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgctcagcaaaccgccgatgacgccgccccaccgaccaccgaggagaccggt
ccggcggcggtaccgttgctggccccccgggagggcgttcccgaggtcacggccgacgac
gcggcactggagtcggtggtggccgccttcgcggccgggagcgggccggtggcggtggac
gcggagcgggcgtccggctaccggtacgggcagcgcgcgtatctggtgcagttgcggcgc
gagggcgcgggtacggtcctgatcgacccggtggcctgccccgatctgagcgcgctgggc
gcggcgctgtccggtacggagtgggtgctgcacgccgcgacgcaggacctgccgtgcctg
cgtgacataggaatggttcccgagcagctgttcgacaccgagctggcgggccggctggcc
gggttcgcccgggtgggcctgggcgtcatggtggagaacgtgctcggctacagcctggag
aaggggcactcggcggtggactggtcctcccgtccgctgcccgagccgtggctgcggtac
gcggcgctggacgtggagttgctggtcgatctccgcgacgcgctggaggaggagctgacc
aagcaggggaagctggagtgggcgcaccaggagttcgcggcgatcgtcgccgctcccccg
gcgccgccgcgcaaggacccctggcggcgcacctcgggggtgcacaaggtgcggcgccgc
agacagctggcggtggtgcgggagctgtggaccacccgcgaccacgtggcgcagcggcgt
gatctgtccccgggcaaggtgctggcggacgcggcgatcgtggcggcggcgctggcggtg
ccggccgatgtgacggcgctggcggcgctgcccggtttcgggcaccggatggggcggcgg
cagttgcagcagtggcaggcggcggtcgaccgggcgaagcggctgccggagtcgcagctt
ccgcagccggggcagccggtgacgggtcccccgccgccccggtcgtgggcggacaaggat
ccggcggcggcggcgcggctggcggcggcgcgggcggcggtgacggcgcacgcggaggag
ctgcggctgccgcaggagaatctgctggcgcccgacacggtgcgccggctgtgctgggag
ccgccggcgggtgccgagccggagctggtggcgcagtcgctgcgctcgctgggcgcgcgg
gagtggcagatcgagcagacggtgccgttgctgacccaggcgctggcggccgacgcctga
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