Synechococcus sp. PCC 6312: Syn6312_0912
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Entry
Syn6312_0912 CDS
T02370
Name
(GenBank) helicase, putative, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
syne
Synechococcus sp. PCC 6312
Pathway
syne03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Syn6312_0912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syne03400
]
Syn6312_0912
Enzymes [BR:
syne01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Syn6312_0912
DNA repair and recombination proteins [BR:
syne03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Syn6312_0912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_4
SH3_13
UvrD_C_2
HHH_5
AAA_11
Viral_helicase1
PIF1
HHH_2
AAA_22
DNA_pol_lambd_f
DEAD
Helicase_RecD
UvrD_C
SLFN-g3_helicase
nSTAND3
AAA_16
AAA
UvrD-helicase
AAA_28
PhoH
SRP54
CbiA
T2SSE
AAA_5
HHH
TsaE
NACHT
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
AFY60118
UniProt:
K9RRL3
LinkDB
All DBs
Position
901679..903901
Genome browser
AA seq
740 aa
AA seq
DB search
MVVVTRNHHGMASPTVEEIQGTVERVTFHSPDSGYTIARLDVKGYQELVTIIGSFPQLQA
GTTIRLWGQWREYPKYGSQLQVQRYEELKPATLNGIEKYLGSGLIKGVGQKTARKIVNHF
GLETLEIIESQVDRLIEVPGLGERRVKQIQGAWNDQRTIRDVMVFLQGHGVSPTHAVKIF
KQYGEQSVTVVTDNPYRLATDIYGIGFVTADAIARKIGITPNSEYRYQAGIRHVLDTAGE
DGHCFLPLSQLVSTVIERLTLDDHVPKADQVEFLLNEMVRGKQIMRAEVNGEGVYYAPPF
YRAEMGLAKAIQALTASSVSVDMERVDNWLRRYSERVGLPLAPKQLEAVRQAVSQRLLIL
TGGPGTGKTFTTRTIATLWRAMGKKVLLASPTGRAAQRLSEVTGQEAITLHRLLEFSPKS
MQFQRNEDNPLEADAVIVDEVSMLDLFLAYSLMRAIPLTVQVLLVGDADQLPSVGAGAVL
RDLINSQAVPVVRLTEVFRQAQTSAIVTEAHRINQGQYPKLEPMSDTPESDCLWHGAEEA
EQGVIAITSIVSEFIPTLGFDPRRDVQVLCPMTRSVVGTRNLNAVLQSVLNPSDLTKPAL
QRGGQILRVGDRVLQRVNDYDRDVFNGDLGWIEAIDPEEQETTVCFGNRSVTYDWADLDE
ITLAWPCTIHKSQGSEFPVVILPMYMQHYLMLSRNLLYTGLTRARKLAILVGPKKAIGLA
VRETKDKLRFTRLKELLITP
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
gtggttgtcgtcacccgcaaccatcacggtatggcctccccaacagtcgaagaaatccaa
ggcacagtagagcgagttacctttcactcaccggatagtgggtacaccatagctcggctc
gatgtgaaggggtatcaagagctagtcactatcattggcagctttccacaacttcaggca
ggaaccaccatccgactctgggggcagtggcgagagtatcccaagtacggctcccaactc
caggtgcaacgatatgaagaactgaagcccgccaccctcaacggcatcgaaaaatatttg
ggcagtggcttgattaagggagttggacagaaaaccgctcgcaaaatcgtcaaccacttc
gggctagaaaccctagaaatcattgaaagtcaagttgaccgattaattgaagtccctggc
ctgggtgaaagacgggtcaagcaaatccaaggggcctggaatgaccagcggacaattcga
gatgtcatggttttcttacagggccatggggtgagtcccacccatgccgtcaaaatcttc
aagcagtatggggagcagtcagtcacggtcgtcactgacaacccctatcggctggcgacc
gacatctacggcattggctttgtcaccgctgatgccattgcccgcaagattgggattacc
ccgaacagcgagtatcgctaccaggccgggattcgtcatgtcttagatacggcgggagaa
gacgggcattgcttcttacccctcagccaacttgtcagcaccgtgattgaacgcctcacc
ctggatgaccacgttcctaaggcagaccaggttgaatttctgctcaatgaaatggtcaga
gggaaacagatcatgcgagccgaggtgaacggagaaggagtctattatgcgccccccttc
taccgagccgagatgggattagccaaagcgattcaagccttgactgccagcagcgtcagt
gtggatatggaacgagtcgataactggctgaggcgatacagcgagcgggtgggactgccc
ctggccccgaagcaactcgaagcggtgcgccaagccgtgagtcaacgactacttatcctc
acaggtgggccaggcacaggtaaaaccttcaccacccgcacgattgccaccctctggcgg
gccatgggcaaaaaggtattactcgcttcccccacgggacgggccgcccaacgtctgagt
gaagtcaccggacaagaggcgattacgttgcaccggctcctagagttttcgcccaagagc
atgcagttccaacggaatgaggataaccccttagaggctgatgccgtcattgtggatgag
gtctcgatgttagacctgttcttggcctacagcttgatgcgagccattcccttaacagtc
caagtccttctagttggggatgcagaccaactacccagcgtgggagcaggagccgtctta
cgagatttgattaactctcaagccgtaccagtcgtccgactgactgaagtcttccgtcag
gcccagaccagtgccattgtcacggaagcccaccggatcaaccaggggcagtatcctaag
ctggagccgatgtcagatacgccagagtcagactgcctgtggcatggggcagaagaagcc
gagcaaggcgtgattgccatcaccagcatcgtctcggagtttatccccaccctgggcttt
gaccccagacgagatgtgcaagttctctgcccaatgacccgcagtgttgtgggtactcgc
aacctcaatgctgtacttcagtcggtgctgaacccgtcagacctaacgaagcctgcactt
caacggggcgggcaaatcttacgggttggcgaccgagtcttgcagcgagtgaatgactat
gaccgtgacgtattcaacggcgacctgggctggattgaggcgattgacccggaggaacaa
gaaaccaccgtctgctttggtaatcgttctgtcacctatgactgggcagacctcgatgaa
attaccttggcctggccctgcacgatccacaagtcccaagggagtgagtttccggttgtg
attctgccgatgtatatgcagcactatctgatgctctcccgcaacttgctttacacagga
ctgaccagggccaggaagctggcgatcttagttggccccaaaaaagcaatcgggctggca
gtccgagaaacgaaagacaagctccggtttactcgcctcaaggaattactgataacacct
taa
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