Synechococcus sp. KORDI-100: KR100_01160
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Entry
KR100_01160 CDS
T03344
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
synk
Synechococcus sp. KORDI-100
Pathway
synk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KR100_01160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synk03019
]
KR100_01160
Messenger RNA biogenesis [BR:
synk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KR100_01160
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B
RMMBL
RNase_J_C
Lactamase_B_2
UL11
Motif
Other DBs
NCBI-ProteinID:
AII42015
UniProt:
A0A076GX95
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All DBs
Position
215340..217337
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AA seq
665 aa
AA seq
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MTNSSRSAKGQEPCLRVIPLGGLHEIGKNTCVFEYGDDLMLVDAGLAFPSDGMHGVNVVL
PDTSFLRENQKRIRGMIVTHGHEDHIGGISHHLKHFNIPVIYGPRLALSMLTGKMDEAGV
SDRTTLQTVSPRDVVKVGQHFSVEFIRNTHSMADSYSLAITTPVGTIIFTGDFKFDHTPV
DGENFDLARLAHHGDQGVLCLFSDSTNAEVPGFCPPERSVFPNLDRHISSAEGRVIITTF
ASSIHRVSMILELAIKNGRKVGLLGRSMLNVIAKARELGYMRAPDELFVPIKQINDVPDR
ETLLLMTGSQGEPLAALSRISRGEHPQVKVKTTDTIIFSASPIPGNTISVVNTIDKLMML
GAKVVYGKGEGIHVSGHGFQEDQKLMLALTKPKFFVPVHGEHRMLVQHARTGHSMGVPEN
NTLIIDNGDVVELTPDSIRKGNPVKSGIELLDQSRNGIVDARVLKERQQLAEDGVVTILA
AISTDGAMVAPPRVNLRGVVTTADARKMSMWTEREVGWVLENRWKQLCRNTGGKAPEVDW
MGVQREVEVGLGRRMRRELQVEPLILCLVQPAPAGTPAYKSKAMEEKDDRPAPRNRGGRH
GGGGYSGQGRREPTPAPVRSNIARTNTASVNTARTAVAEKVESKPVSAEPEMPAGRTRRR
RSAAV
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacagttcaagatccgccaaaggccaggagccctgcctgcgggtgattcccctc
ggcggtctgcatgaaatcggtaagaacacctgtgtgttcgagtacggcgacgacctgatg
ctggtggatgccggactcgctttccccagtgacggcatgcatggggtgaatgtggtgctg
ccggacaccagcttcctgcgcgagaaccagaagcggatccgcggcatgatcgtcacccac
ggtcatgaggaccatatcggtgggatttcccaccacctcaagcacttcaacattccggtg
atctacgggccgcggctggccctttcgatgctcaccgggaaaatggatgaggcgggcgtc
agcgaccgcaccaccctgcagaccgtcagcccccgtgatgtggtgaaggttggccagcac
ttctcggtggagttcatcagaaacacccactcgatggcggacagctactcgctggccatc
accacacctgtgggaacgatcatcttcaccggcgatttcaagttcgaccacaccccggtg
gatggcgagaacttcgatctggcccgcctggcccatcacggtgatcagggtgtgctgtgt
ctgttcagcgactccaccaacgctgaggttcccggcttctgcccgcctgagcgctcggtg
ttccccaacctcgaccgccacatctcaagcgccgagggtcgggtgatcatcaccaccttc
gccagttcgattcatcgcgtctcgatgatcctggagctggcgatcaagaacggccgcaag
gtgggtctgctcggtcgctcgatgctcaatgtgatcgccaaggcccgggagctcggctac
atgcgtgcccccgatgaactctttgttccgatcaagcagatcaacgacgttcctgatcgt
gaaacgctcctgctgatgaccggtagtcagggggaaccgttggcggccctgagtcggatt
tcccgcggcgagcacccccaggtcaaggtgaagaccaccgacacgatcatcttctcggcc
agtccgatccccggtaacaccatctccgtggtgaacaccatcgacaagttgatgatgctg
ggggcgaaggtggtctacggcaaaggcgaaggcattcacgtctccggacatggcttccag
gaggaccagaagctgatgctggcgctcaccaagcccaaattcttcgtgccggtgcacggt
gagcacaggatgttggtgcagcacgccagaaccggtcattcgatgggtgtgccggagaac
aacaccctgatcatcgacaacggtgatgtggtggagctcaccccggattccattcgcaag
gggaatccggtgaagtctggtatcgagctgctcgatcagtcccgcaacggcatcgttgat
gcccgggtgctgaaggagcgccagcagttggctgaggatggggtcgtcacgatcctggct
gcgatcagcaccgatggggccatggtggctccgccgcgggtgaacctgcgtggtgtggtc
acgaccgctgatgcccgcaagatgtcgatgtggaccgagcgtgaggtcggttgggtcttg
gaaaaccgctggaagcagctctgccgcaataccggtggaaaggcaccggaggtggactgg
atgggtgtgcagcgtgaggttgaggtgggcctcggccgccggatgcggcgtgaactgcag
gtggagcccttgattctttgcctggttcagccggctccggctggaacgccggcctacaaa
tcgaaggccatggaggagaaggacgaccgaccggcccccagaaatcggggcggacgccat
ggtggtggcggatactctggtcagggtcgccgggagccaacaccggcacccgtcagatct
aacatcgccagaaccaacaccgccagtgttaataccgcccgcacagctgtggcagagaag
gtggagtccaaacctgtctccgctgagccggagatgccggcaggccggacgcgccggcgt
cgttcagcggcggtttaa
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