Synechococcus sp. WH 7803: SynWH7803_1509
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Entry
SynWH7803_1509 CDS
T00524
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
syx
Synechococcus sp. WH 7803
Pathway
syx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SynWH7803_1509 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syx03400
]
SynWH7803_1509 (recD)
Enzymes [BR:
syx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SynWH7803_1509 (recD)
DNA repair and recombination proteins [BR:
syx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SynWH7803_1509 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
PhoH
AAA_22
Helicase_RecD
SLFN-g3_helicase
nSTAND1
nSTAND3
PIF1
AAA_16
DEAD
UvrD_C
AAA_7
AAA
ATPase
Zeta_toxin
T2SSE
FtsK_SpoIIIE
AAA_28
SH3_13
Flavi_DEAD
Herpes_Helicase
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
CAK23935
CyanoBase:
SynWH7803_1509
UniProt:
A5GLX0
LinkDB
All DBs
Position
1385306..1386919
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AA seq
537 aa
AA seq
DB search
MIRSEGAQRSLQLGDGVMAMLRRRRPPAADLSATDQQALEELVQALTAALSAGDTSLRIE
ENQRELLERSGWLTDPPQVMVLDGDQLHWTRWHQAMQRLELELIDRSHAQPSGSLKTDSL
PTDSLPPDLGRLNTEQRAAVQAIRRHRLVMVSGGPGTGKTSTVQAMLLQAMAERGALRIH
LAAPTGKAARRLEEALQSDARTRSLPCTTLHRLLEARPSGFARNGRHPLNLDLLVVDEAS
MVDLNLAQALLSALPREAQLVLVGDADQLPPIGVGAVWRHLQHPERRHCFGDAAISLHRV
YRNRGELARLGSLLRDAGEEAFWNACNGLNDGANVTLQICRDRRIPDAVTQTLRHRLAEL
GRATADLSTDAEGQPNPTTSAELLGRLDDLIVLCPRRRGSWGVEALHRELVQGDDPAGWP
EGLPVLCSENQMDLGLANGDLGLAIGRGASRRLLFRCNDGHAGSLYRLIHPARIRQLEPA
LALTIHKAQGSEVDNVIVLWPPQEAQESSALLYTAMTRARQQLILYRLAPDVIDGML
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcagcgaaggggcacaacgcagcctgcaactcggcgacggcgtgatggccatg
ctgcgccgccgccgccctcctgcggcagacctgtcagcgacggatcagcaggcgctcgag
gaactcgttcaggcactcactgccgcactgagcgcgggagacaccagcttgcgcatcgag
gagaaccagcgcgagctgctcgagcgcagcggctggctcacggatcctcctcaggtgatg
gttctcgatggcgatcaactgcactggacgcgctggcatcaggccatgcagcgcctggag
ctggagctcattgatcgcagtcacgcacaacccagcggcagccttaaaacggacagcctt
cccacggacagccttccccctgacctcgggaggctcaatacggaacaacgggctgctgtt
caagcgatcagacgccatcgcctggtgatggtgagcggcggcccaggaacgggaaagacc
agcaccgtgcaagcgatgctgctgcaagccatggctgaacgcggagccctgcgcatccat
ctggcggctcctaccggcaaggcggcccggcgcctggaggaagcgctgcaaagcgacgct
cggacccggagcttgccctgcaccaccctgcatcgtcttctagaagcgcgccccagtggc
ttcgcgcgcaatggcaggcatcccctgaatctcgatctgctcgtggtcgatgaggcctcc
atggtggatctcaacctcgcgcaggctttgctcagcgccctgcctcgcgaagcacagctg
gtgctcgtgggagatgccgatcagcttccgcccatcggcgttggagcggtctggcgccat
cttcagcatccggagcgccggcactgtttcggtgatgccgccatcagcctccaccgggtc
tatcgcaacagaggtgagctggcacggctggggagcctgctccgcgacgctggcgaagag
gcgttctggaacgcctgcaacgggctgaacgacggggcgaatgtcaccctccaaatctgc
cgcgaccgtcgcatccccgacgcggtgacccaaaccttgcgccatcgcctcgccgagctc
ggccgcgcgacggccgacttgagcaccgacgccgagggccaacccaatcccacaaccagc
gcagaactgctggggcggctcgacgatctcatcgttctttgtcctcgtcgccggggatcc
tggggtgttgaggccctgcatcgcgaactggtgcagggcgatgatccggcgggatggcct
gaagggttgccggtgctgtgcagcgaaaatcagatggatctcggactcgccaatggcgac
ctgggcctggcgatcggtcgcggtgcgtcgcgacggttgctgttccgttgcaacgacggc
catgcaggcagcctgtaccgactgattcatccggcgcgcatccgccagctggaaccggct
ctagccctcaccattcataaggcgcagggaagtgaggtcgacaacgtgatcgtgctctgg
cctccacaggaggcacaggagtcttcagcccttctctacacagcgatgacccgggcacgc
caacagctcatcctgtatcgcctggcgccagacgtgatcgacggcatgctgtga
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