Siansivirga zeaxanthinifaciens: AW14_09130
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Entry
AW14_09130 CDS
T03699
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sze
Siansivirga zeaxanthinifaciens
Pathway
sze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AW14_09130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sze03019
]
AW14_09130
03400 DNA repair and recombination proteins [BR:
sze03400
]
AW14_09130
Enzymes [BR:
sze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AW14_09130
Messenger RNA biogenesis [BR:
sze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AW14_09130
DNA repair and recombination proteins [BR:
sze03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AW14_09130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
HTH_11
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AJR03757
UniProt:
A0A0C5WBX3
LinkDB
All DBs
Position
1959738..1961882
Genome browser
AA seq
714 aa
AA seq
DB search
MQVNTIKDQVFLNLKNYFGYDSFRANQQDIVETVLQKRDCLVIMPTGGGKSICFQLPALS
FKGVTLVISPLIALMKDQVDGLNANGIAAAYFNSSQSSEQQLAIIERVVQAEIKLLYVAP
ESLASLQNILSETYISCVAIDEAHCISSWGHDFRPSYQQLGFLKKTLPNIPFIALTATAD
KATREDIIKQLHLEDAKIFIASFDRKNIALEVRPANNRMAQIIKFINARPNQSGIIYCLS
RKTTEQLSKKLKASKIPAEAYHAGLSFEKRSKVQEAFVHDKIQIVCATIAFGMGIDKSNV
RWVVHYNMPKNIEGYYQEIGRAGRDGLKSHALLFHSYADVIQLQNFASGAANEAVQISKL
DRMKQFTEATSCRRKILLSYFGELLGSNCGNCDVCKNPPQFFDGTIIAQKILSAIYRLKQ
QEAMGMIIDVLRGAQNATTISKGYQDLSTFGIGKDISWKHWQHFIIQLINQGFCEIAFHK
NNALQLTKFSSYVLFKGAKVALTKPVEISEIKPLVKEKKSRVKSSETNTKSAANSLFERL
KQLRYRIALEEGIPAYLVFSDATLKEIERERPLSENDFLSISGVGQRKLEVYGEEFMAEI
MNFMGSKIKKPKKEDTYTVTYNLYKTGLSIEEIAVQRKLNTTTIYSHIAKLYSTGKQINL
YDFVSPSDVEAVKKARTVLNAPKTLKAYFEYFNESIDYFKIRLALSIIEKETSK
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtaaataccatcaaagaccaagtgtttttaaatttaaaaaactactttggttac
gatagctttagagccaatcaacaagacattgttgaaactgtgctccaaaaaagagactgt
ttggttattatgccaacgggtggtggtaaatctatttgttttcagcttccagctctatcg
tttaaaggtgtcacgctggtaatttcgccgcttattgccttaatgaaagatcaggtagat
ggacttaatgccaatggtatcgcggccgcttactttaatagcagtcagagtagcgaacag
caacttgccattatagaacgtgtggttcaggcagaaataaaattactttatgtggcgcca
gaaagcttggcatcgcttcaaaatatactttcagaaacctatataagttgtgtggctatc
gacgaagctcattgtatttcgtcttggggtcatgattttcggccttcatatcaacaatta
ggatttttaaaaaaaacgcttcccaatattccctttatagcacttacggcaaccgccgat
aaagccacacgagaagatattattaagcagttacatttagaagatgctaaaatatttata
gcatccttcgaccgaaaaaatattgcattagaagtacgaccggctaataaccgaatggca
caaattattaagtttataaatgccagacccaaccaatcgggtattatttattgcctaagc
agaaaaaccaccgagcagttatcaaaaaaattaaaagccagtaaaattcctgccgaagcc
tatcacgccggattaagtttcgaaaaacgctctaaagttcaggaggcgtttgtacacgat
aaaattcaaattgtatgtgcgaccatagcctttgggatgggcatcgataaatcgaatgtg
cgctgggtagtacattataatatgccaaaaaatattgagggttactaccaggaaattggc
cgtgcgggtcgcgacggactaaaatcgcatgctttattatttcacagttatgccgatgtt
attcagttgcaaaacttcgccagtggtgcagccaacgaagcagttcaaatttcgaaatta
gaccgcatgaaacagtttacagaagccacatcctgccgccggaaaattttattgagttat
tttggcgagctattggggtctaactgcggaaattgcgatgtttgtaaaaatccgccacag
tttttcgatgggactattattgcgcaaaaaatcctatcggctatttaccgtttaaagcaa
caagaagccatgggaatgattatcgatgtgttgcgtggtgcccaaaacgctactactatt
tcgaaaggctaccaagacctttcaaccttcggaattggtaaagacatctcctggaaacat
tggcaacattttattattcagcttataaatcaggggttttgcgaaattgcctttcataaa
aataacgcattgcaactcaccaaattttccagttatgtgttgtttaaaggcgctaaagtg
gcccttaccaaaccagtagagataagcgaaattaaaccgctagttaaagagaaaaaatcc
cgagtaaaatcatctgaaacaaacacaaaatcggccgccaatagtttattcgagcgcctc
aaacagttgcgctacagaatagctttagaagaaggtattcctgcctatttagtttttagc
gatgccactttaaaagaaattgaacgcgaacgcccgcttagcgaaaacgattttttaagt
attagtggagtagggcagcgtaaactggaagtttatggcgaggagtttatggcagaaatt
atgaattttatgggttctaaaattaagaaacccaaaaaagaagacacctataccgtaacc
tacaacctctacaaaacaggcctgtctatagaagaaatagccgtacaacgcaaattaaat
accaccactatttattcgcatatcgccaaattatacagcaccggaaagcaaattaattta
tacgattttgtttcccccagcgatgtcgaagccgtaaaaaaagccagaaccgttttaaat
gcgccaaaaaccttaaaagcctatttcgaatattttaacgagtctatcgattattttaaa
attcgactggcgttaagcatcatcgaaaaagaaacttccaaataa
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