Tyto alba (Barn owl): 116965206
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Entry
116965206 CDS
T07816
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
tala
Tyto alba (Barn owl)
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tala04147
]
116965206 (COL18A1)
00535 Proteoglycans [BR:
tala00535
]
116965206 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
tala00536
]
116965206 (COL18A1)
Exosome [BR:
tala04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
116965206 (COL18A1)
Proteoglycans [BR:
tala00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
116965206 (COL18A1)
Glycosaminoglycan binding proteins [BR:
tala00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116965206 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
116965206
NCBI-ProteinID:
XP_042639953
LinkDB
All DBs
Position
Unknown
AA seq
1711 aa
AA seq
DB search
MAPPRLGFLLLLACCFPSSETQLLDWVWGSTKTTGSPAALGEGTAVPEQLASAAAPSPST
SPGTWGGQVVGDLTTPHPQELDPGTAAPAGEGTVAENAEQWDRNATGLVESTAQPSVAPP
RSTSPFPGQDAASSLTEDPQLLGTGTTEDPQLLETGTTEDPQLLETGTTEDPQLLGTGTS
EDPQLLETGTSEDPQLLGTGTSEDPQLLGTGTTKDLQLLETGTTEDSQLLEMGTTKDLQL
LETGTTKDPQLLRTGTTEDPQLLRTGTTEDPQLLRTGTTEDLQLWGTGTTEDPQLLRTGT
TEDPQLLRTGTTEDPQLLRTGTTEDPQFLRTGTTEDLQLRGTGTTEDLQLWGTGTTEDPQ
LLGTGTPATTGTWVSLQRPAGPRPESLSSEVSLLELIGDPPPEEILKIYGPDNNPGYVFG
PNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAITDSSQSIIYVGVKLSELRAG
KQQIIFYYTEPGSPSSYAAATFTVPTLLNQWTRFAISVEEDEVILYLDCEEHERVRFERS
PDEMELEDGSGLFVAQAGGADPDKYQGVIADLKLQGDPRAAERQCEEDEDDTEEVSGDFG
SGAEGGYQPSGKVKGVPGLVDAVPVTSPPVAAGSGQRSGGGSPQQAERTRVEETQQISTG
GTGPKGEKGEKGERGLKGDAGAGSIVGTGSVKGEKGQKGELGVKGSAGFGYPGSKGQKGE
PGEPGTPGSLSRHADGSVVEQVTGPPGPPGKDGAPGRDGEPGDPGEDGKPGNMGPQGFPG
TPGEPGLKGEKGDPGVGPRGPPGPPGPPGPPGPSSKHDKLTFIDMEGSGFGGDLESLRGP
RGPPGPPGPPGVPGLPGEPGRFGMNRTDVPGPPGLPGKAGIPGPPGPAGPQGPPGRDGAA
GHPGPKGEQGDMGDLGLPGAPGPKGSKGEMGPAGTPGEMGLAGLPGPIGPRGQPGPPGPP
GPPGPGYEAGFGDMEGSGLPIATGSPGPPGPEGPQGVPGLPGVKGEVGSPGQPGLPGLKG
DAGVPGVDGRPGLEGFPGPQGPKGDRGSPGEKGERGQDGVGQPGPPGPPGPPGQVITVSS
EDKSLVALPGPEGRPGHAGFPGPVGPKGDRGSSGPQGSPGLKGEKGEPGVIISPDGTVVT
AKVKGEKGEPGLRGPVGPSGPQGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPVDVSSVLG
LRGPPGPPGPPGPPGPPGSIVYDSSNAFSDSSHPALPAFPGFHQFPGQKGEKGDAGAPGP
PGHFPYDPSHFGANLRGDKGDAGPKGDKGEPGSTPLYGPSASGLPGPPGPQGYPGLPGPK
GDSIVGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQAISIPGPPGPPGPPG
PPGTSGMSLGLRALPTYQAMLSAVHELPEGGLIFLTDRQELYVRLRGGFRRVLLEEHNLI
PSSALDNEVYDKPPSVHYAGPQPPLQPRGPLHPLRNHSPPPTARPWRGDEVVANQHRLPE
QPLLHHQHELLNSYYIHRRPDPAPVAAHVHQDFQPALHLVALNAPLSGGMRGIRGADFQC
FQQARQVGLAGTFRAFLSSRLQDLYSIVRRADRAAVPIVNLRDEVLFSNWEALFTGSGAP
LRAGARILSFDGRDVLRDAGWPQKSVWHGSDAKGRRLPESYCETWRTEEHAATGQASSLG
SGKLLEQVASSCQHAFVVLCIENSFMTAAKK
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atggccccacctcgcttggggtttctgctcctcctggcttgctgcttcccctcctctgaa
acgcagctcctggactgggtttggggcagcacgaagaccacgggaagcccggcggcactc
ggcgagggaaccgcagtaccggagcagctcgcctctgcggcagctcccagccccagcacg
tccccggggacgtggggtggccaggtggtgggggacctcaccaccccacacccccaggag
ctggatcccggcacggcggcacctgcgggcgaggggaccgtggccgaaaacgctgagcag
tgggacaggaatgccacggggctggtggagagcacggcacagccaagcgttgctcctccc
cgcagcacgtcacctttcccgggccaggatgcggccagtagcctcactgaggacccacag
ctcctggggacggggaccactgaggacccacagctcctggagacggggaccactgaggac
ccacagctcctggagacggggaccactgaggacccacagctcctggggacggggacctct
gaggacccacagctcctggagacggggacctctgaggacccacagctcctggggacgggg
acctctgaggacccacagctcctggggacggggaccaccaaggacctgcagctcctggag
acagggaccactgaagactcacagctcctggagatggggaccaccaaggacctgcagctc
ctggagacagggaccaccaaggacccacagctcctgaggacagggaccactgaggacccg
cagctcctgaggacagggaccactgaggacccacagctcctgaggacagggaccactgag
gacctgcagctctgggggacagggaccactgaggatccacagctcctgaggacagggacc
actgaggacccgcagctcctgaggacagggaccactgaggacccgcagctcctgaggaca
gggaccactgaggacccacagttcctgaggacagggaccaccgaggacctgcagctccgg
gggacagggaccaccgaggacctgcagctctgggggacagggaccaccgaggacccgcag
ctcctggggacggggacccccgccacgacggggacatgggtgtccttgcagagaccggca
ggtccccggccagagagcctgagctccgaggtcagcctcctggagctgatcggagacccc
ccgccagaggagatcctcaaaatttacggccccgacaacaaccccggctatgtcttcggc
cccaacgccaacacgggccaggtggcccggtaccacctgccaagccctttttaccgggac
ttttccctcctgttccacatccagcccaccactccccgggccggcgtgctctttgccatc
acggactcctcacagagcatcatctacgtgggcgtcaagctctcggagctgcgggcgggc
aagcagcaaatcatcttctactacacggagccaggctcgccgagctcgtacgcggcagcc
accttcaccgtgcccaccttgctcaaccagtggacacgctttgccatcagcgtggaggag
gatgaagtcatcctctacctggactgtgaggagcatgagcgggtccgcttcgagcgctcc
ccggatgagatggagctggaagatggctctgggctcttcgttgctcaggctggaggagcc
gacccagataaataccagggggtgatcgctgatttgaagctgcaaggggacccgcgggcg
gccgagcgccagtgcgaggaagatgaggatgacactgaggaggtctctggcgattttggc
agtggggcagaaggtggataccaaccctctgggaaagtcaagggtgtcccggggctagtg
gatgccgtccctgtcacctctccccccgtggcagcgggcagcgggcagaggagcggcggg
gggtccccgcagcaagccgagaggaccagagtggaggagacacagcagatctccacggga
ggcactggacccaaaggtgaaaagggggagaagggcgaacgtggcctgaaaggggacgct
ggggccggcagcatcgtggggacgggcagtgtcaagggcgaaaaggggcagaaaggagaa
ctgggcgttaagggcagcgctggatttggctaccccggctccaagggccagaaaggggaa
ccaggtgaacccggcacccccgggagcctctcacggcacgcagatggctcggtggtggag
caggtcaccggtcccccggggccgccggggaaggacggagcccccggcagggacggcgag
cccggcgatcctggcgaggacggcaaacccggcaatatggggccccaggggttccctggg
acaccgggggaacctgggctgaagggggagaagggtgacccaggcgtggggccgagggga
ccccccggaccgcctggccccccaggacctccaggaccctcctccaaacatgacaagctg
accttcatcgacatggagggctctggcttcggcggcgacctggagagcctgcggggtcca
cgagggccgcccggtcccccagggccacccggggtgcccggtttgccgggggagccggga
cggtttgggatgaaccgcacggacgtgccgggaccgccagggctgccgggcaaggccggg
atccccggacccccggggccagcgggtcctcaaggtcctcctggaagagatggcgcagct
gggcatccagggcccaaaggagagcagggcgacatgggcgaccttggcctccctggtgca
ccgggacccaagggcagcaagggggaaatgggaccagcaggaaccccgggagaaatgggc
ttagctggtcttcccgggcccatcgggccccgagggcagccagggccccccggccccccg
ggaccaccggggccaggctacgaggctggatttggtgacatggagggctcggggctgccg
atcgccactggctcccctggaccacccggacctgaaggaccacagggggtgccaggactg
ccgggggtgaagggagaggtcggcagccccgggcagcctggcttgccgggactgaaggga
gatgctggcgtgcccggtgtggacggccgccctggcctggagggcttccctggaccacag
ggacccaaaggtgacagaggcagtcccggtgagaagggtgagcgaggccaagatggtgtg
ggacagcccggcccgcctggtccacctggtccccctggacaggtcatcactgtctcaagt
gaagataagtctttggtggctttgcctggtccagaaggcagaccgggtcacgccggcttc
ccgggccccgtgggaccaaaaggagaccgggggtcatctggtccccagggctccccaggg
ttgaagggggagaagggggagcctggtgtcatcatcagccccgacgggaccgtggtgact
gcgaaggtgaaaggagaaaagggggaaccggggctgcggggaccagtgggaccctcgggt
ccccagggacgagcagggatgaagggcgagatcggctttccgggcagacccggacgtccc
ggcatgaacgggctgaagggcgagaagggtgaccccgtggatgtcagcagtgtgctgggc
ttgcggggtcccccaggacccccagggcccccagggccccctgggccacctggcagcata
gtctacgacagcagcaatgccttcagcgactccagccatcccgcgctgccagccttcccc
ggtttccaccagtttccaggacaaaagggagaaaaaggcgatgctggagccccgggaccc
ccaggccacttcccctacgacccgagtcacttcggtgccaacctgcggggtgacaagggg
gatgcaggtcccaagggtgacaagggtgagccgggcagcaccccactctacggtcccagc
gcctctgggctgccagggcctccgggaccccagggctaccctgggctgccgggtcccaag
ggggacagtatcgttgggcctccagggcctcctggacctcagggcccccctggtatcgga
tacgaggggcggcagggcccccctggcccccccggcccccctggtcccccctccttccca
ggtccccacagacaagctatcagcattcctggaccccctggaccaccgggaccccccgga
ccaccaggcaccagcgggatgtccttggggctgcgtgccctgccgacctaccaggcgatg
ctgagcgctgtgcacgagctgcccgagggcggcctcatcttcctcaccgaccggcaagag
ctctacgtccgcctgcgcgggggcttccgacgggtgctgctggaggagcacaacctgatc
cccagttcagctctggacaacgaggtgtacgacaagccacccagcgtccactacgccggc
ccccagcccccgctccagcctcgcggacccctgcaccccctccgcaaccacagccccccg
cccaccgcccgaccctggcgcggggacgaggtggtggccaaccagcaccgcctgcccgag
caacccttgctccaccaccagcacgagctcctcaacagctactacatccaccgccggccg
gatccggcccccgtggctgcccacgtgcaccaggacttccagcccgcccttcacctggtg
gccctgaacgccccgctaagcggtggcatgcgcggcatccggggcgccgatttccagtgc
ttccagcaagcccggcaggtcgggctggctggcaccttccgtgccttcctctcctcccgc
ctgcaggacctctacagcatcgtgcgcagggccgaccgcgccgccgtgcccatcgtcaac
ctccgggacgaagtgctcttcagtaactgggaagcccttttcacgggcagcggggccccg
ctgcgagccggcgcccgcatcctctccttcgacggtcgggatgtcctgcgggatgcgggg
tggccacagaagagtgtctggcacggctcagatgccaagggccggcgcttgcctgagagc
tactgtgagacgtggcggacggaggagcacgccgccaccggccaggcttcctcgctgggc
tcgggcaagctgctggagcaggtggctagcagctgccagcacgccttcgtcgtcctctgc
atcgagaacagcttcatgactgccgccaaaaagtga
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integrated database retrieval system
