Thiobacillus denitrificans: Tbd_0122
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Entry
Tbd_0122 CDS
T00275
Name
(GenBank) D-alanine--D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd00470
D-Amino acid metabolism
tbd00550
Peptidoglycan biosynthesis
tbd01100
Metabolic pathways
tbd01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Tbd_0122
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Tbd_0122
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
Tbd_0122
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
tbd01011
]
Tbd_0122
Enzymes [BR:
tbd01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
Tbd_0122
Peptidoglycan biosynthesis and degradation proteins [BR:
tbd01011
]
Precursor biosynthesis
Amino acid ligase
Tbd_0122
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
CPSase_L_D2
ATP-grasp
ATP-grasp_3
ATP-grasp_4
TTL
ATPgrasp_ST
ATPgrasp_YheCD
Motif
Other DBs
NCBI-ProteinID:
AAZ96075
UniProt:
Q3SMH0
LinkDB
All DBs
Position
130908..131840
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AA seq
310 aa
AA seq
DB search
MSETVSAKKFGKVAVMLGGTSAERPVSLNSGNAVLAALTRQGIDAHAFDPATRSLGDLMS
GEFDRVFIALHGRYGEDGCMQGALELLGIPYTGSGVMASAVGMDKWRTKLLWRAAGLPTA
DWAMLDATSDFAATEARLGLPIFVKPAREGSSIGMSKVTEAGTLQAAYEKAAEHDALVLA
EKFIDGAEFTVGIVGDSALPLIRLQPAAEKAFYDFEAKYLRDDTQYHCPAGLPDAQEMSL
RKLALDAFRLLGGRGWGRVDLMTDRLGNPYLLEVNTSPGMTDHSLVPMAARVAGIDFDAL
CVTILEQTLG
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaaacggtttcagcgaaaaaattcggcaaggtcgccgtgatgctcggcggcacc
tcggccgagcggccggtatccctgaacagcggcaatgcggtgctcgcggcgttgacgcgc
cagggcatcgacgcgcacgcgttcgacccggcgacacgcagcctcggcgacctcatgagc
ggcgagttcgatcgtgtgttcatcgcgctgcacgggcgctacggcgaagacggctgcatg
cagggcgccctcgaactgctcggcattccctataccggcagcggggtgatggcctcggcg
gtcggcatggacaagtggcgcaccaagctgctgtggcgtgcggccggcctgccgaccgcg
gactgggccatgctcgacgcgacgagcgatttcgccgcgaccgaggccaggctcgggctg
ccgatcttcgtgaagccggcgcgcgagggttcgagcatcggcatgagcaaggtgaccgag
gccggaacgttgcaggccgcctacgagaaggccgccgagcacgacgcgctcgtgctcgcg
gaaaaattcatcgacggcgccgaattcacggtcggcatcgtcggcgacagcgcgctgccg
ctgatccgtctgcaaccggcagccgaaaaggcgttttacgatttcgaggcgaaatacctg
cgcgacgacacccagtaccactgcccggccggcctccccgacgcccaggagatgagcctg
cgcaaactcgcgctcgacgccttccgcctgctcggcggccgcggctggggccgtgtcgac
ctcatgaccgatcgcctcggcaatccctatctgctggaagtgaacacctcgcccggcatg
accgaccacagcctcgttccgatggccgcgcgcgtcgccggcatcgacttcgacgcgctt
tgcgtcacgatcctggagcagacgctcggatga
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