KEGG   Trematomus bernacchii (emerald rockcod): 117471100
Entry
117471100         CDS       T09643                                 
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
  KO
K12590  exosome complex component RRP46
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tben00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    117471100 (exosc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tben03019]
    117471100 (exosc5)
Messenger RNA biogenesis [BR:tben03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     117471100 (exosc5)
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 117471100
NCBI-ProteinID: XP_033971790
EnsemblRapid: ENSTBNG00005014390
LinkDB
Position
Unknown
AA seq 220 aa
MMEVCGSTNVSLREFGCEQTLLSRPDGSASFVQGDTSVMAAVYGPAEVKVSKEIYDRATL
EVLIQPKVGLPSVRERSQEQCVRETCEASLLLTLHPRSSLTLVLQLIHDDGSRLACFLNA
ACMALMDAGLPMSCLFCGVTCAINTDSEIITDPTAAQEKESRALMTFAIDSKEQRVMMSY
TKGSFSVHELQQCIAVSQKASENIFQFYRDSVSRRYSKNL
NT seq 663 nt   +upstreamnt  +downstreamnt
atgatggaagtgtgcggctctacgaacgtttctctgagggagttcggctgtgaacaaacg
ttactgtctcgaccggacgggtcagcctccttcgtacaaggtgacacgagtgtgatggcc
gcagtgtacggaccagctgaggtcaaagtcagtaaggaaatctacgaccgagcaaccctg
gaggtgttgatccagcccaaagtgggactgcccagtgtaagggagcgatcccaggagcag
tgtgtgagagagacctgtgaggcgtctctgctcctgaccctccacccccgctcctccctc
accctggtcctccagctgatccatgacgacggctcccgcctggcctgcttcctgaacgca
gcctgcatggccctgatggacgcaggcctgcccatgagctgcctgttctgtggggtgact
tgcgccatcaacacagactctgagatcatcacggaccccaccgcggctcaggagaaggaa
agtcgagctttgatgacttttgctattgacagcaaggaacaaagagtgatgatgtcatac
accaagggatcattttcagttcatgagctgcagcagtgtatagcagtcagccagaaagcc
tcagagaacatcttccagttctacagagactccgtcagcaggcgctactccaaaaacctc
tga

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