Trematomus bernacchii (emerald rockcod): 117473691
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Entry
117473691 CDS
T09643
Symbol
usp42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42 isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tben01002
]
117473691 (usp42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tben04121
]
117473691 (usp42)
Enzymes [BR:
tben01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
117473691 (usp42)
Peptidases and inhibitors [BR:
tben01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
117473691 (usp42)
Ubiquitin system [BR:
tben04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
117473691 (usp42)
BRITE hierarchy
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
117473691
NCBI-ProteinID:
XP_033975329
LinkDB
All DBs
Position
Unknown
AA seq
1223 aa
AA seq
DB search
MTIVDRSSEHSDHESVGCKRSPFTSGDAGMDGSCSSSWAMGPTMSSDSPRMKAAGGCLGP
TPGAAVYNSTASSGDRPKEQVISSGDGIDTPQKVLFPPERLNLKWTQVQRIGAGLQNMGN
TCFLNSALQCLTYTPPFANYLLTREHSKTCHEPGFCMMCTMQNHIIQVFANSGNVIKPIG
VLNELKRIAKHFRYGSQEDAHEFLRYTVDAMQKSCLPGPKLDRQTQATTFIHQVFGGYLR
SRVKCLNCKAVSDTFDPFLDITLEIKTAPSVSKALEQFVKPEQLDGENAYKCTKCKKMVT
ASKRFTIHRSSNVLTLSLKRFANFSGGKLTKDVKYPEYLDLQPFMSQSQGDPQLYALFAV
LVHSGFSCHAGHYFCYIKASNGQWYQMNDSSVSVSDIRSVLNQQAYVLFYSKSSEVKKAG
DFSHMSHSAGIPGQSSPRPVVIPRINTGIHHNNNNNIGFIGPQLPPHMTKRALHVNGNGS
LRDFHTNSKPSTSSSVGGKSIHGLASSSSSSSSSSSSCSSISHSISRPTMIPDQDKRQKL
SFFIGQGKPNRPSSSSSSSSSSSYSQPSSASCSSSSSSSSSLSSSQSTSDVRFVPRQLNH
VNGTSRSNGGHHAGGNGASFLVPYGQESSEESDQENSGSLDNGGLAKSHLNGNKRAGENS
SQATNGDSGAHHNGNGLNGPANGVSKSSQNGHHNGHHKVNGHNTPNKLSGINHDTSPSVA
TVVSNGHDSDHSQTSQEAHIAASSLASSSQSPHPAASETQSVPPPDIRATTVSEPLPPQT
PSSSPPSATTTNTHPVTSREPASSSSPAPPHSIPAALPPPTDDSQNTNGTSAAPQGISRG
EEEAKDLPRTRDPSAGTEGRTDAKEQPQSKPSSRGGERQTSRDRERDWSRDKDRHYRDRS
PVRERDGDRHRYRRDSRDRSRDRSRDRSRDRSRDRSRDRHQHRSYKDRLVPYNRSYRDPD
RRRGRPFLTPRDRERNNCNSRDDWGHERRGYGHSYREDRSRQPESRESRPMKERSTGRER
DYYTSRGETSSPNTETETSEKSKGSPPRERPNTNESPPNKEDHKRNADPPSKEREDSSET
RGSKKHKKSKNKKSKDKERHRESGSSEADSDRAADPKKKKKKQRRRRSESEQPGPSRVRG
SKSSEERESSKRRYYDTKDAKQHNGYSPEKRRRTDHSGSSEQLPPSNPTSPTDASNQHLN
GYKGNGYSHTNGDSHGSSSGWKH
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttgacagatcttcagaacattctgaccacgagtcagtggggtgtaagcga
tctccctttaccagtggagacgcggggatggatggcagctgttccagcagctgggcgatg
ggtcccaccatgtcgagcgactctcccaggatgaaggctgcaggaggctgcctgggcccc
acgccgggagccgccgtctacaacagcaccgcttcctctggggaccggcccaaggagcaa
gtgataagcagtggagatggcatcgacacgccccagaaggtcctcttccctccagagcgg
ctcaacctaaagtggactcaggttcagcgtattggtgccggtctgcagaacatggggaac
acctgcttcctcaactcggcgctgcagtgtctcacctacaccccgccgttcgccaactac
ttgctgactcgggagcactctaaaacatgtcacgagccggggttctgtatgatgtgcacc
atgcaaaaccacatcattcaggtctttgcaaactctgggaatgtcattaagcccatcggt
gtgctcaatgagctcaaaaggattgctaagcacttccgctatggcagccaggaggatgcg
cacgagttcttgcggtacacagtggatgctatgcaaaagtcctgcttacctggacccaaa
ttggacaggcaaacgcaggcaaccactttcatccatcaagtgtttggcgggtacctgagg
tccagagttaaatgtttaaactgcaaagccgtatccgatacatttgacccgtttttggat
attactctggaaataaagacggctcccagtgtctcaaaggctctggagcagtttgtaaag
ccagaacagctggacggagaaaacgcctacaaatgcacaaagtgcaaaaaaatggtcaca
gcctcaaagagatttaccatccaccgcagctccaacgtgctcaccctgtcgctcaaacgc
tttgcaaacttcagtggaggcaaactcacaaaggatgtgaaatatccggagtatctggac
ctgcagcccttcatgtctcagtctcaaggagatccgcagctctacgctctgttcgctgtg
ctggtccactctgggttcagctgtcatgccggacactacttctgctatattaaggcgagc
aacgggcagtggtatcagatgaacgactcctctgtgtctgtcagcgacatccgctctgtt
ctcaaccagcaggcctacgtccttttctactcgaagtccagtgaagtgaagaaagcaggg
gacttcagccacatgagccacagcgcaggcatccccggtcagtcgtctccgcggccggtg
gtgatcccacgcatcaacaccggcattcaccacaacaacaacaacaacatcggcttcatt
ggtccccagctgccgccacacatgaccaagcgcgctcttcacgtcaacgggaacggatct
ctgagggactttcacaccaactccaagcccagcaccagcagcagtgttggggggaaatct
atccatggactggcttcctcctcctcctcctcctcctcctcctcctcctcctgttcttcc
atctcccactctatcagccggcccaccatgatcccagaccaggacaagcggcagaagctt
tctttcttcatcggacaaggcaaacccaaccgcccgtcctcctcctcctcctcttcctcc
tcgtcctcttacagccagccttcctctgccagctgctcctcctcctcttcctcctccagc
tctctctcctcctcgcagtctacctcagacgttcgctttgttccgcgtcagctaaaccac
gttaacggcacgtctcgcagtaacggcggtcaccacgcgggaggaaacggagcgtcgttc
ttggtgccgtacggccaggagtcctcggaggaatcggaccaggagaactctggctctctg
gataacggcggattagcaaagtctcacctcaacggaaacaagagagcgggagagaattcc
tctcaagccacaaacggagactcgggagcgcatcacaacggcaacgggttaaacggaccc
gccaacggcgtctctaaatccagtcaaaatggccaccataacggacaccacaaagtgaat
ggacacaacacccctaataagctctctggcattaatcatgacacttcaccctctgtggct
acggttgtttctaatggacacgacagcgatcacagtcaaacaagccaagaggcccatatt
gctgcctcctccctggccagttcctctcagagcccccatcccgctgccagtgaaacccag
agcgtcccccctcctgacataagggctacaactgtgtctgaacccctgcctccgcaaaca
ccatcctcctctccaccttcagctactacaacaaacactcaccctgtcacgtccagagaa
cctgcttcttcctcctctcctgccccgccgcacagcatccctgcagccttaccccccccg
acagatgactcccaaaacaccaacgggacgtctgcagctccacaggggattagccgaggt
gaagaggaggcaaaggatctaccgaggacacgtgatccgtcagcagggactgaaggacgc
accgacgccaaggagcaaccccagtccaagcccagttctagaggaggggaaagacaaacg
tcccgggacagagagagagactggagcagagacaaggacagacactacagggacaggagc
ccggtgcgagagagagacggagacagacatcgctacagacgagattctcgggatcgttct
cgggatcgttctcgggatcgttctcgggatcgttctcgggatcgttctcgggatcgccac
caacaccgctcgtacaaggaccgcttggttccgtacaaccggtcctacagggaccctgat
cgtcgcaggggccggcctttcctcacacccagggatcgggagcggaacaattgcaactcc
agagatgattggggtcacgagcggaggggatacggtcactcgtaccgagaggataggagt
cgtcagccggagagcagagagtcccggccgatgaaggagaggagcaccggcagggagagg
gattattatacgtctagaggggagacttcctcgccaaacacagagacagaaacctcggaa
aagtcaaagggttccccccctcgggagcgtccgaacacaaatgagtcgcctccgaacaag
gaggatcacaagaggaacgccgatcctccgagcaaggagagggaggacagctctgagact
cggggctcgaaaaaacacaaaaagagcaagaataagaagtcaaaggataaagagagacac
cgagagagcgggagctccgaagcggattcagaccgagccgctgaccccaaaaagaagaag
aagaagcagaggaggaggcgcagcgagtcggagcagccgggaccgtcgagggtccgcggg
agcaagagcagcgaggagagggagagcagcaagagacgatactacgacacaaaggacgct
aaacaacacaacggttactctcctgaaaaacggcggcgcacagatcacagcggcagcagc
gagcagctccccccctcaaaccccacctccccaacagacgcttcaaatcaacatctcaac
ggatacaaaggaaatggttacagccacacgaacggcgactcccacggatcctccagtggc
tggaaacactga
DBGET
integrated database retrieval system
