Trematomus bernacchii (emerald rockcod): 117473789 Help Entry 117473789         CDS       T09643                                  Symbol col1a1b Name (RefSeq) collagen, type I, alpha 1b   KO K06236   collagen type I alpha Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben04510   Focal adhesion tben04512   ECM-receptor interaction tben04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:tben00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     117473789 (col1a1b)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     117473789 (col1a1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     117473789 (col1a1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:tben00536]     117473789 (col1a1b) Glycosaminoglycan binding proteins [BR:tben00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    117473789 (col1a1b) BRITE hierarchy Motif Pfam:  Collagen COLFI VWC TILa Motif Other DBs NCBI-GeneID:  117473789 NCBI-ProteinID:  XP_033975555 LinkDB All DBs Position Unknown AA seq 1447 aa AA seqDB search MFSFVDIRLALLLSATVLLARGQGEDDSSFGSCKLEGQLYNDKDVWKPEPCQICVCDSGN VMCDEVICEDTSECADPIIPDGECCPICPDDTEEPTPPETGRVGPNGDAGPVGHPGNDGL DGQPGLPGPPGPPGPPGLGGNFSPQMSYVDHSKSSGGPPVPGPMGPMGARGPAGSPGSSG PQGFNGHSGEPGEPGASGAMGPRGPAGPLGKNGDDGEPGKAGRPGERGAAGPQGARGFPG TPGLPGIKGHRGFSGLDGAKGDAGPAGPKGEGGLAGENGIAGAMGARGLPGERGRPGAPG PSGARGNDGNNGGAGPPGPTGPAGSPGFPGGAGAKGETGPAGGRGNEGPQGARGEAGNPG PSGPAGAAGSAGSDGSAGAKGSPGAGGIAGAPGFPGSRGPAGSQGALGAPGPKGNNGDHG LSGAKGEPGSKGESGPAGVQGLPGASGEDGKKGGRGEPGGAGARGPNGERGGPGARGFPG ADGGAGGKGGPGERGPNGPAGGQGATGESGISGAGGAPGSKGMTGSPGTPGSDGKGGPAG APGQDGGSGPAGGSGSRGQPGVMGFPGPKGVTGENGKGGERGGVGATGALGAPGKDGDVG APGPSGISGPAGEKGEQGPNGPPGFQGLPGPQGATGETGKPGDQGGLGEAGPNGPSGPRG DRGFPGERGVPGGAGPMGGRGSPGPSGNDGAKGEPGAGGVPGGKGSPGMQGMPGERGASG LPGVKGERGDGGVKGADGGAGKDGMRGLNGAIGVPGPPGAQGEKGEGGAVGTSGPTGIRG ASGERGETGPSGPAGFAGAPGADGQPGSKGESGDSGPKGEGGAPGPSGPIGGSGPQGPSG PSGPKGARGGAGPPGATGFPGASGRVGPPGPSGVGGPPGPLGPVGKEGARGGRGESGLAG RPGEIGGAGPQGLSGEKGSPGSDGPSGAPGIPGPGGVVGEKGIVGSSGQRGERGAFGPAG AVGEPGNQGPAGAFGARGTPGPAGPPGLSGPTGEAGREGSAGNDGASGRDGAGGPKGDRG ESGTSGPPGPPGAPGAPGVVGASGKSGGRGESGPAGNAGPAGPAGVRGPAGPAGARGDRG EAGEAGDRGHKGHRGFTGMQGLPGTSGGSGERGPSGVSGPAGPRGPSGSNGSPGKEGVHG GAGPIGPPGPRGRNGEMGPSGSPGPAGAPGPPGPSGGGGNFNSYPRQEKGPDPLRGGHYR ADDPNMMRDRDMEVDTTLKTLTQKVEKIQSPDGTQKSPVRMCRDLKMAHPEWKSDMFWVD PNQGSPLDAIKVHCNMETGETCVYPSESSIPMKNWYLSKNIREKKHVWFSESMTGGSQFQ YGSDGADTEDVNIQMTFMRLMSNQASQNMTYHCKNSIAYMDSATGNLKKALLLQGTNDVE IRAEGNSRFTYTVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGVE VGPVCFL NT seq 4344 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatattcggttagcgctgttgctgagcgcaacagtgcttttggcg agaggacaaggcgaggatgatagctcatttggcagctgcaaattagaaggacagttgtac aacgacaaggatgtatggaaaccagagccctgccagatctgcgtctgtgacagtggcaac gtcatgtgcgacgaggtgatctgtgaggacacatccgagtgcgccgatcccatcatccct gatggagagtgctgccccatctgccccgatgataccgaggagccaactccacctgagaca ggaagagttggtcccaatggagacgcgggtccagttggtcatcctggcaacgatggactt gatggacagcctggtcttcccggccctcccggcccccctggcccccctggccttggcgga aacttttctcctcagatgagctacgttgaccactccaaatccagcggcggcccacctgtc cctggcccaatgggtcctatgggtgctcgtggtcctgctggatcccctggatcctctggt cctcagggtttcaatggtcactccggagagcccggtgagcccggagcttctggtgcaatg ggtcctcgtggtcccgccggaccccttggaaagaatggagatgatggtgagcccggcaaa gctggtcgccccggtgagcgtggagccgctggccctcagggtgctcgtggattccccgga acccccggactccccggcatcaagggacacagaggattcagcggtctggatggagctaag ggagacgctggacccgctggccccaagggagagggtggtttagctggtgagaacggtatc gccggcgccatgggcgctcgtggtcttcctggtgagagaggtcgccctggagctcctggc ccatctggtgctcgtggtaacgatggcaacaatggcggtgctggtccccctggacctacc ggacctgctggttctcctggtttccccggtggtgctggtgctaagggagagactggccct gctggaggtcgtggaaatgagggaccccagggagcccgtggtgaggctggtaaccccgga ccttctggacccgctggagctgctggttccgccggatctgatggttccgctggtgctaag ggttctcctggtgctggtggtatcgctggtgctcctggtttccccggctctcgtggtcct gctggatctcagggtgctctcggtgcccccggtcccaagggtaacaacggtgaccacggt ctttctggtgctaagggagagcctggttccaagggagagtctggccccgctggagttcag ggacttcctggcgcctctggtgaggatggcaagaaaggaggacgtggagagcccggtggt gctggagcccgtggacccaatggagagcgcggtggccctggtgctcgcggtttccctggt gctgatggaggtgctggtggcaagggaggccccggtgagcgtggtcccaatggcccagct ggaggtcagggagccaccggtgagtctggtatctccggtgctggtggcgcacctggatcc aagggtatgactggtagccccggaacccccggctctgatggcaaaggtggacctgctggt gcccccggccaagatggaggctctggacctgctggtggttctggatcccgtggacagccc ggagttatgggattccccggacccaagggagtcactggtgagaacggtaagggcggtgag agaggaggcgttggagccactggcgctcttggtgctcctggcaaagatggtgatgttggt gctcctggaccttctggtatttctggacctgctggagagaagggagagcagggccccaac ggaccccccggattccagggtcttcccggaccccaaggtgctactggtgagactggcaag cctggtgatcagggtggtcttggtgaggctggacccaacggcccatctggaccaagaggt gacagaggtttccccggtgagcgcggtgtccctggcggtgctggcccaatgggaggccgt ggttctcctggcccctctggtaacgatggagccaagggagagcctggtgctggtggtgtc cccggcggtaagggatcccccggtatgcagggaatgcccggtgagcgcggtgcttctggt ttgcccggtgtcaagggagagagaggtgatggtggagtcaagggagctgatggtggtgcc ggaaaagacggcatgcgcggtttgaatggtgctattggagttcctggaccccctggtgct cagggtgagaagggtgagggtggcgctgttggaacttctggacccaccggtattcgtggt gcctctggcgagcgtggagagactggaccttctggacccgctggatttgctggagctcct ggtgctgatggtcagcctggttccaagggagagagtggtgactctggacccaagggagaa ggtggtgctcctggaccctctggacccatcggtggttctggacctcagggaccttctgga ccctctggacctaaaggtgctcgtggtggtgctggaccccctggtgctactggtttcccc ggagcttccggcagagttggaccccctggcccctctggagttggtggcccccctggaccc ctcggacccgttggcaaagagggagcaagaggaggacgtggtgagtccggcctcgctggt cgccccggtgagattggaggtgctggaccccaaggactttctggggagaagggatctcct ggctctgatggaccctctggagcccctggtatccccggaccaggaggtgttgttggagag aaaggtattgtcggttcctctggacagcgtggagagcgtggtgcctttggtccggccgga gctgttggcgagcccggaaatcagggacctgctggtgcttttggtgcgcgtggaaccccc ggacctgctggaccccctggtctgtctggtcctaccggagaagctggacgtgagggatct gccggtaacgatggtgcctctggtcgcgatggagctggtggccccaagggagaccgtgga gagtctggtacgtctggacccccaggaccccctggtgctccaggagcccccggagtggtc ggcgcctctggaaagtctggtggccgtggagagtctggccccgctggtaatgccggccct gctggccctgctggtgtccgtggccccgctggccctgctggtgcaaggggagacagagga gaggctggtgaggctggagacagaggacacaagggacacagaggattcaccggaatgcag ggtcttcccggcacctccggaggatctggagagagaggaccttccggtgtttctggacct gctggacccagaggaccctctggatctaacggctcccccggtaaggagggcgtccacggc ggggccggacccatcggaccccctggacctcgtggtcgcaatggagagatgggaccttcc ggttctccaggacctgccggagcccctggaccccccggaccttccggcggtggaggcaac ttcaacagctatcctcgtcaggagaagggacccgatcccctccgcggcggccactaccgc gctgatgaccccaacatgatgcgcgatcgcgacatggaggttgacactaccctcaagacc ctgacccagaaggtcgagaagatccaaagccccgacggtacccagaagagcccagtccgc atgtgccgtgacttgaagatggcccaccccgaatggaagagcgacatgttctgggttgac cccaaccagggatcccctcttgatgctatcaaggtccactgcaacatggagactggcgag acttgcgtctaccccagcgagtccagcatccccatgaagaactggtacctcagcaagaac atcagagagaagaagcacgtctggttcagcgagtccatgactggcggatcccagttccag tatggcagcgatggagctgataccgaggatgtcaacatccagatgaccttcatgcgcctg atgtccaaccaggcatctcagaacatgacataccactgcaagaacagcattgcctacatg gactccgccaccggcaacctgaagaaggccctccttctccagggaaccaacgacgttgag atcagagccgagggcaacagccgcttcacatacaccgtcagcgaggatggctgcacgtca cacactggcacatggggcaagacagtcatcgactacaagacatcaaaaacatctcgcctg cccatcattgacattgctcctatggatgttggtgcacctgatcaggaatttggcgtcgaa gttggccccgtctgcttcttgtaa

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