Trematomus bernacchii (emerald rockcod): 117478749
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Entry
117478749 CDS
T09643
Symbol
si:ch211-196i2.1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117478749 (si:ch211-196i2.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117478749 (si:ch211-196i2.1)
Glycosaminoglycan binding proteins [BR:
tben00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117478749 (si:ch211-196i2.1)
BRITE hierarchy
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
117478749
NCBI-ProteinID:
XP_033981547
LinkDB
All DBs
Position
Unknown
AA seq
1793 aa
AA seq
DB search
MFCRLLKWTLCLLGLMSTSTASPDDAPGEFGGESGSGMLQTDEVSILQELSPQVLNSSNT
SMTVDDSRCPVLQVGQYSTLSVPLQDLLIDGFAEEFSLLVQLRSRQADERSVFTMLSPDS
RVMLQLRISAYAIIFIGTQQRHYEFPVSGLSDGKWHHVALSVSAKRLALYVDCSLLESVD
WVYRSMGISTEGLLMIGGIIEAFETPFEGHLRQLTFLMGDPDAAQRHCSHHPPRCGETSR
KPPRSPRTNRLENILLSSNDLENLLGDPEDEAFLRFGTNMFLRRGSSRGDGTVPSGTNRK
GSVSRGDVFVVDEDTDLLDPTFQNGGQVNPQWKPSRNGLKGSQKGKPEMIEENITTDEKV
DSSGRTSSLFPGKPSSDIIELDIGGTTKKPSVDLPVPKIPSDPRTSTDSGTPTKAVVEKG
RPITNGRDPDKERSAVVTVSRDGDLVLGSDGKMYRLQRGPPGRMGPPGQEGCTGDPGRPG
FKGDKGKLGSEGRSGKRGESGPPGPPGFPTFYLWKNTAEELAAFQQSNFYQLLRAGWPSR
EGPEGSPGEMGKPGMQGPLGEPGDRGRPGMPGDLGERGLRGPSGKAGTPGRDGENGVDGE
PGLHGDHGLQGTWGDRGERGSKGEKGDEGLIGVIGPRGEIGDPGEKGSPGLSGPPGPVGL
QGPQGTRGGCGPEGPYGPDGESGLDGPAGLAGPRGAPGMTGRVGAQGMNGSRGDMGPAGS
VGPNGPQGPLGLEGQMGPPGLRGLQGHPGLIGASGPKGEPGPVGPMGARGDPGFEGPMGA
LGTKGPMGFPGLTGKGGPDGDKGDPGPKGDKGIQGAAGIRGPQGERGSLGFQGFEGTKGQ
PGPSGTEGENGETGLQGKQGGRGLKGNRGPDGRNGKPGPRGSKGRPGQRGHVGQPGPSGL
PGPHGPEGAEGKPGTQGPSGAAGSPGSKGAAGSQGLAGDRGADGPLGSLGPPGKPGPPGS
PGAPGEKGFTGKTGMEGPQGPVGMYGIQGNVGMRGNPGFMGERGEQGLRGLPGPAGKQGP
TGLPGPSGEKGPRGPQGRPGDEGSKGIPGPPGPPGIQGVDGAAGKPGPRGSQGPLGPLGP
QGPAGIPGPQGADGLLGAAGEIGNTGLPGLLGDAGPPGQDGLQGLPGQTGNEGPTGRKGD
QGDHGSCGNLGPPGPPGETGLEGLKGLQGPSGPEGKEGDIGHPGEPGDPGPKGEKGGVGP
IGLSGREGPWGDLGENGQRGPKGEKGHIGLMGEPGLMGEVGPAGLPGLQGILGSQGPPGL
DGPQGQKGDSGPEGMTGPPGSGGPQGPRGARGVRGDAGGQGPPGPVGKVGPHGDLGAKGE
VGPQGLKGEPGAPGQQGEQGEEGLPGIQGPPGLPGLEGPPGEIGPHGAPGPTGSPGVNGR
QGAEGQHGMAGEKGNDGKTGSPGRTGHVGRRGKRGKAGVRGTRGERGHKGQKGDTGLFGL
SGWPGLIGILGLRGDLGEQGEKGKEGEKGDMGLSGPPGADGMKGIRGFVGVPGPPAVKGD
QGNIGPPGPRGTTGMPGLPGMFGLKGLKGYPGFPGLSGRRGLPGPPGIPGPPGQSLNMTL
TQLRDLMYVSDKPNYSLLQTLLDSLQLELRLLLDPPDGSKEHPASTCLELWLCHPDYSSG
MYYIDPNQGSPADALLAYCSFSSTSKQTCLHPRDSQLPMKAWMEEFSEEGSFQWLSRLEQ
GFQFYYPGANVVQMRFLRLHSSTALQNLTFSCHPGHKLGPVDQDIKFLTDSRKQSFVGAV
KDCVPGEESVSVTRESVFEFEDLQLLPLRDVALMGGGNSTHQFSFTVGPVCFS
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atgttctgcaggttgctaaaatggacactttgcctcctcgggctcatgagcacgagcacc
gcctcaccggacgatgcaccgggggagtttggaggagagtccggctctgggatgctgcag
acagatgaggtgagcattctgcaggagctttctcctcaggtgttgaacagcagtaacacc
tcaatgactgtagatgacagcaggtgtccagtcctacaggtgggacagtactccaccttg
tctgtccctcttcaagacctcctcattgatggatttgcagaagagttcagtttgctggtg
cagctgcggagtcgtcaggcagacgaacgcagcgtcttcaccatgctcagccccgacagc
cgagtgatgctgcagctgcggatcagcgcctacgccatcatcttcataggaacacaacag
cgtcattacgaattcccagtcagcggcctgtctgatggaaagtggcaccatgtggcgctc
agtgtgtctgccaagcggctggcgctgtacgtggactgctctctgctggagagcgtggac
tgggtgtaccgcagcatggggatcagcactgaggggctgctcatgatcggaggcatcatc
gaggccttcgagactccatttgaaggtcatctccgacagctgaccttcctgatgggcgac
cctgacgccgcccagcgacactgcagccaccacccaccccgctgtggggagacctcccgc
aagcctcctcgatccccacgcaccaaccgcctggagaatatactgctgtcctcaaacgac
ctggagaacttgctgggggatcctgaggatgaggcttttttgcgctttggaactaatatg
tttctgcgccgagggagttctcgcggggacgggacggtgccttcagggaccaatcggaaa
ggttcagtgagtcgtggggatgtctttgtggtagatgaggacaccgacttgttggatcca
accttccaaaatggcggacaagtcaaccctcagtggaaaccttccagaaatggacttaag
ggaagccagaagggaaagcctgaaatgatagaggagaacataacaacagacgaaaaggtt
gactccagtgggagaacgtcatcattgttcccagggaaaccatccagtgacatcattgaa
ctggacatcgggggtaccacgaagaagccctcagtggatttgcctgtacctaagatccct
tcggatccgagaacttccacggattctgggacaccaacaaaggcagtagtcgagaagggg
agacccatcaccaatggtagagatccagacaaggagcgctctgccgttgtgactgtatcc
cgagatggagacctggtcctgggctcagatggcaaaatgtaccggctccaaagaggacca
ccaggccgaatgggtcccccagggcaggaaggctgtactggtgatcctggccggcctggg
tttaaaggtgataagggtaagctgggttctgaagggcgttcaggaaaaagaggggagtca
ggacctcctggaccgccagggtttcccaccttctacctgtggaagaacacagccgaggaa
ttggctgcctttcagcaaagcaatttctaccagttacttcgtgctggttggcctagtaga
gaaggccctgaaggatcacccggagagatgggcaagcccggcatgcagggtccacttggc
gaacctggagatcgtggaagacccgggatgccaggagatttgggcgagcggggtctcagg
ggcccttcaggaaaggccgggaccccaggcagagacggggaaaatggggtagacggtgag
ccggggctacatggtgatcatggactacagggcacctggggagacaggggagaacgaggg
tccaaaggggaaaaaggtgatgagggtctcattggggtcattggtccaagaggagaaatt
ggtgatcctggtgagaagggctcacctggtttatctggccctcctggtcctgtcggacta
caagggcctcaggggacccgaggtggctgcgggccagaggggccctatgggcctgatgga
gagagtggactggatggtcccgctggtcttgcagggccgaggggtgctccgggtatgaca
ggacgagtcggagcgcaaggaatgaatggctcaagaggcgacatgggacctgctggcagt
gttggtcccaatggcccacaggggcctctaggtttagagggacagatgggacctccagga
ctcagaggactccaaggacatccaggactgatcggggcttctggacctaaaggagaacct
gggcctgtggggccaatgggggcccggggggatcccggctttgaggggccaatgggtgct
ttagggacaaagggccctatgggttttcccggtttaacgggtaaagggggaccagatggg
gacaaaggggatccaggacctaaaggcgacaaaggtattcagggggcagcaggtattagg
ggtcctcagggagagaggggctccctcggcttccaaggtttcgagggcaccaagggccag
cctggccccagtggcactgagggtgaaaatggagaaactggtcttcagggaaaacagggc
ggccgtgggttaaagggaaacagggggccggatggacgcaacggcaaaccaggacccaga
ggaagcaagggccgacctggacagaggggccacgtcggccaaccgggtccatcgggtttg
ccagggccacatggaccagagggagctgaaggaaagcctggtacacagggtccctcaggt
gcagctggcagtcctggcagtaaaggagcagcgggttctcaaggacttgctggagacaga
ggagcagatggccccctaggttctctggggccaccagggaaaccaggacctccaggatcc
ccaggagctccaggagaaaagggtttcacagggaagacaggcatggagggacctcagggc
ccagtaggcatgtatggtatccagggaaacgtgggcatgcgagggaatccagggttcatg
ggagaaaggggcgagcaaggtttacgaggtttacccgggccggcggggaagcaaggtcct
acaggattgccaggtccttctggagaaaaggggccccggggacctcagggtcggcctgga
gatgaaggatccaaagggataccgggcccacctggccctccaggtatccaaggtgttgat
ggggcagctggaaaacctggacctagaggaagccaagggcctctaggacctctggggcca
caggggccagcaggaatcccagggccacagggtgctgatggcttattaggagcagcaggg
gaaataggaaatacgggtctacctggcttgctcggtgatgctggcccccccggacaggat
ggactgcagggtctccctggccaaacaggaaatgaaggcccaactggacggaaaggagac
cagggggatcatggctcttgtgggaatcttggtcctccgggccctccaggagagacagga
cttgagggcctaaaaggcttacagggcccgtctggacctgagggtaaagagggtgatatc
gggcatcctggggaacctggagatcctggaccaaaaggggagaagggtggagtgggtcct
ataggactgtcgggtcgagaaggcccctggggagacctcggtgaaaatggccaaaggggg
ccaaagggggagaagggccacattggactcatgggcgagccggggctgatgggagaagtg
gggcctgcaggtctgccggggttacagggaatactaggctctcagggacccccggggcta
gatggacctcagggccagaagggggattctgggcctgagggaatgacaggacctccgggg
tcaggggggcctcaggggccgagaggtgctcgtggtgtcagaggagacgcaggggggcag
ggaccacctggtccagtaggaaaagttggccctcacggagacctcggggcgaaaggggaa
gtggggccacagggactgaagggagagccaggagccccaggacaacaaggggaacagggt
gaggaaggtctgccaggaatccaaggtcctcctggtctgcccggattagaggggcctcct
ggagaaattggaccccacggtgccccgggtcccacagggtctcctggagtgaatggaaga
caaggagccgagggccaacacggcatggcaggggagaagggaaacgatggcaagactgga
tcgccagggaggacgggtcatgttggaaggagggggaaacggggtaaggccggagtcaga
gggaccagaggagagagaggacacaagggccaaaagggagacacagggctgttcggcctc
tctgggtggccggggctcatcggaatcctgggtttacgtggagatctgggagagcaaggt
gaaaaggggaaagagggagagaaaggagacatgggactgtctggaccacctggagctgat
ggcatgaagggtattcgtggttttgtcggagtgcctggtccacctgctgtgaagggagat
cagggaaatattggcccaccaggaccgaggggtacgacagggatgccaggactgcctggt
atgtttggattgaagggtttgaaaggctacccaggtttccccggtctgtccggcaggagg
gggctcccgggtccacctgggatccctggacctcccggacagtcactgaacatgacgctg
actcaactcagggatctgatgtacgtgtccgataagcccaactactctctgctccagact
ctgctggactctctgcagctggagctccggctgctgctggacccccccgacggcagcaag
gagcacccagcctccacctgcctggagctgtggctttgtcaccccgactacagcagcgga
atgtattacattgacccgaaccagggcagcccagcggacgctctgctggcctactgcagc
ttctcctccacatccaaacagacctgcctccacccccgagactctcagttgcccatgaaa
gcctggatggaagaattctctgaagaaggatcctttcagtggctcagcaggctggagcag
ggctttcagttttactatccaggagctaatgtggtgcagatgcgtttcctgaggttgcac
agcagcactgcgctccagaatctgaccttctcctgccacccaggacacaaactgggcccc
gtggaccaagacatcaagttcctcactgacagcaggaagcagagttttgttggagcagtt
aaagactgcgtgcctggagaggagagcgtttctgtcactcgggagtctgtgtttgagttt
gaggacctccagctgcttcctctgagagacgtagcactgatgggtggcggcaactcgaca
catcagttcagcttcactgtgggacctgtgtgtttcagctaa
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integrated database retrieval system
