Trematomus bernacchii (emerald rockcod): 117482226
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Entry
117482226 CDS
T09643
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117482226 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117482226 (fip1l1b)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117482226 (fip1l1b)
BRITE hierarchy
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
117482226
NCBI-ProteinID:
XP_033986160
EnsemblRapid:
ENSTBNG00005025483
LinkDB
All DBs
Position
Unknown
AA seq
561 aa
AA seq
DB search
MSAEEADKTGTTDASGGDEEEEWLYGDECEDKDEDEEAKLNAAVSAPADASTEDAAEHAT
GNGVASEATGEGEGEGEGVTEDVDSGSDSDDDDDDVRVIIGDIKTGAPQYTTYGAPPVNL
NIKTSGSRPYGQASKMKGVDLDGPGNINGAPVLEADMETFEEKPWRKPGADLSDYFNYGF
NEDTWKAYCEKQKRLRMGLEVSTVSSVASKITVQQGRTGNDKDICVLPVHTSKPDFTSPL
NMYKPVVSQVNRISPPQWPGPPPPQDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNLEG
NNIQVISESTDSEPTQPAKIPPFFPPGGLPPNIPPPPFLPPPPNVNSAPPLIPPPRLPIN
VPPPGFPPPPSGPPPTIIPTLDSHSGGYDGRSVPPYPFPQGAYPPPMAGNVPPPWPPMMD
NSKPWDYYPRREDKREKERERPRERTHEREREREHSPSAMGYTSEEERYRYREYQERGYA
GERHRERSSREKEEGRHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKKSKRS
KEGKDAGEEISADQENQPGME
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaagcggacaaaacaggcaccactgatgccagcggtggagatgaggag
gaagaatggctatatggagatgagtgtgaggacaaagacgaggacgaggaagccaaactg
aatgctgctgtcagtgcacctgctgatgcctccacagaggatgctgctgaacacgctaca
gggaatggagtggcctctgaggcgacaggggagggcgagggtgaaggtgaaggcgtaaca
gaggatgttgatagtggcagtgacagtgatgatgacgacgatgatgtccgtgtcattatt
ggagacattaaaactggagcaccacagtacacaacttatggagctccccctgtcaatctc
aacataaagacgtcaggctccagaccttatggacaagcctccaagatgaaaggagtggat
ctggacggacctggaaacataaacggggctccagtgctggaggcagacatggagaccttt
gaagagaaaccctggaggaagccaggagcggatctgtcagactactttaactacggcttc
aatgaagacacatggaaggcttactgtgaaaaacagaagaggctgcgcatgggcctggaa
gtctctaccgtcagctctgtggcgagcaagatcaccgttcagcaaggcaggacaggcaat
gacaaggacatatgcgttttgcctgttcacacctccaaaccagacttcacatctcctctc
aacatgtacaagcccgttgtcagtcaggtcaacaggatctctccccctcagtggcccggc
ccgcctcctcctcaggacatgtcctattatacgaagacgagtggtacgatagatgtgatt
ggtggaggaacggccaccatcagcagggttgaaggccgacgcagacacaacctggaaggc
aacaatatccaggtgatctctgaaagtacagactctgagcccactcagccggctaagatc
cccccgttcttcccccccgggggccttccacccaacatacctcctcctccattcctccct
ccaccaccaaacgtcaactctgcacccccactcatccccccacccaggttacccattaat
gtccctcctcctggttttcctcctccccccagtgggccccctcctacaatcatccccact
ctggacagtcactctggaggttatgacggacgctctgtccctccctacccgttccctcaa
ggtgcgtaccctccacccatggctggaaatgtgcctcctccttggccccccatgatggac
aactccaagccctgggactactatccccgtcgagaagacaagagagagaaggagagagag
cggccccgagagaggacacatgagcgggagagagagagggagcacagcccgtcagctatg
ggctacaccagcgaagaggagcggtatcgttaccgtgagtaccaggagcgcggttatgca
ggagagcgacatcgtgagcgctcgagccgagagaaagaggaggggcgccacagagagagg
cggcaccgagagaaagaggaggggcgccacaagtcctctcgcagcagtagcaggaggagg
cacgacagcgaggagggcgacagccaccggaggcacaaacacaagaagagcaagaggagc
aaggagggcaaggacgccggcgaggagatcagcgcagaccaagagaaccagccgggcatg
gagtag
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integrated database retrieval system
